RnoEX6051922 @ rn6
Exon Skipping
Gene
ENSRNOG00000008734 | Zmym2
Description
zinc finger MYM-type containing 2 [Source:RGD Symbol;Acc:1593255]
Coordinates
chr15:37181154-37190967:+
Coord C1 exon
chr15:37181154-37181319
Coord A exon
chr15:37182107-37182319
Coord C2 exon
chr15:37190896-37190967
Length
213 bp
Sequences
Splice sites
3' ss Seq
CTTGTTTGTTTTTCTTTTAGATT
3' ss Score
11.11
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
AGATATAACTACAATGAAAGGAACCATTGTTGCTCAAGTGGACTCGAGTGAGTCCTTCCAAGAATTTTGTAGTACATCTTGTTTGTCTCTCTATGAGGACAAGCAGAGTCCTGCTAAAGGAGCTCTAAATAAATCAAGATGCACAATCTGTGGTAAATTGACTGAG
Seq A exon
ATTCGCCATGAAGTTAGTTTTAAAAACATGACTCATAAGCTGTGCAGTGACCACTGCTTTAACAGATACAGAATGGCCAATGGTCTGATAATGAATTGCTGTGAACAGTGTGGAGAATATTTGCCCAGTAAAGGTGCTGGAAATAATGTTTTGGTGATTGATGGTCAGCAGAAAAGATTTTGCTGTCAGAGTTGTGTCAGTGAATACAAACAG
Seq C2 exon
GTAGGTAGCCATCCAAGCTTCCTGAAGGAAGTTCGAGATCACATGCAGGATTCTTTCTTAATGCAGCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008734-'10-10,'10-8,11-10=AN
Average complexity
A_S
Mappability confidence:
89%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(68.9=55.4),PF064679=zf-FCS=PU(40.0=28.6)
A:
PF064679=zf-FCS=PD(55.0=31.0),PF064679=zf-FCS=WD(100=62.0)
C2:
PF064679=zf-FCS=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATGAAAGGAACCATTGTTGC
R:
GGCTGCATTAAGAAAGAATCCTGC
Band lengths:
223-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]