BtaEX6056650 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020403 | ZMYM2
Description
zinc finger MYM-type protein 2 [Source:RefSeq peptide;Acc:NP_001095377]
Coordinates
chr12:36425677-36429187:-
Coord C1 exon
chr12:36429022-36429187
Coord A exon
chr12:36428061-36428273
Coord C2 exon
chr12:36425677-36425748
Length
213 bp
Sequences
Splice sites
3' ss Seq
GCTTGTTGTTTTTCTTTCAGATT
3' ss Score
10.68
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
AGATATAACTACAATGAAAGGAACCATTGTTGCTCAAGTGGACTCAAGTGAATCCTTCCAGGAGTTCTGTAGCACATCTTGTCTGTCTCTCTATGAAGACAAACAGAATCCTACTAAAGGAGCTCTGAATAAATCAAGATGTACAATTTGTGGTAAACTAACAGAG
Seq A exon
ATTCGCCATGAAGTTAGCTTTAAAAACATGACTCATAAGCTGTGCAGTGACCATTGCTTTAACAGATACAGGATGGCTAATGGCCTTATAATGAACTGCTGTGAGCAGTGCGGCGAGTACCTACCCAGCAAAGGAGCTGGGAACAATGTCCTGGTTGTTGATGGTCAGCAGAAGAGGTTTTGCTGCCAGAGTTGTGTCAGTGAATACAAGCAG
Seq C2 exon
GTAGGTAGCCATCCAGGCTTCCTGAAGGAGGTTCGAGATCACACACCAGACTCTTTCCTCACGCAGCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020403-'17-15,'17-14,19-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(68.9=55.4),PF064679=zf-FCS=PU(40.0=28.6)
A:
PF064679=zf-FCS=PD(55.0=31.0),PF064679=zf-FCS=WD(100=62.0)
C2:
PF064679=zf-FCS=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATGAAAGGAACCATTGTTGC
R:
GCTGCGTGAGGAAAGAGTCTG
Band lengths:
222-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]