MmuEX6041800 @ mm10
Exon Skipping
Gene
ENSMUSG00000021945 | Zmym2
Description
zinc finger, MYM-type 2 [Source:MGI Symbol;Acc:MGI:1923257]
Coordinates
chr14:56912952-56919342:+
Coord C1 exon
chr14:56912952-56913117
Coord A exon
chr14:56913956-56914168
Coord C2 exon
chr14:56919271-56919342
Length
213 bp
Sequences
Splice sites
3' ss Seq
TCTGACTGTTTTTCTTTTAGATT
3' ss Score
11.73
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
AGATATAACTACAATGAAGGGAACCATTGTTGCTCAAGTGGACTCAAGTGAGTCCTTCCAAGAATTTTGTAGTACATCTTGTTTGTCTCTCTATGAGGACAAACAGAGTCCTGCTAAAGGAGCTCTAAATAAATCAAGATGCACAATCTGTGGCAAATTAACTGAG
Seq A exon
ATTCGCCATGAAGTTAGTTTTAAAAACATGACTCATAAGCTGTGCAGTGACCACTGCTTTAACAGATACCGAATGGCCAATGGTCTGATAATGAATTGCTGTGAGCAGTGCGGAGAATATTTGCCCAGTAAAGGTGCTGGGAATAATGTTCTGGTGGTTGATGGTCAGCAGAAGAGATTTTGTTGTCAGAGTTGTGTCACTGAATACAAACAG
Seq C2 exon
GTAGGTAGCCATCCAAGCTTCCTGAAGGAAGTTCGGGATCACATGCAGGACTCTTTCTTAATGCAGCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021945-'9-8,'9-6,10-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(68.9=55.4),PF064679=zf-FCS=PU(40.0=28.6)
A:
PF064679=zf-FCS=PD(55.0=31.0),PF064679=zf-FCS=WD(100=62.0)
C2:
PF064679=zf-FCS=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACCATTGTTGCTCAAGTGG
R:
GCTGCATTAAGAAAGAGTCCTGC
Band lengths:
214-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types