HsaEX6039454 @ hg38
Exon Skipping
Gene
ENSG00000121741 | ZMYM2
Description
zinc finger MYM-type containing 2 [Source:HGNC Symbol;Acc:HGNC:12989]
Coordinates
chr13:20005074-20019963:+
Coord C1 exon
chr13:20005074-20005239
Coord A exon
chr13:20006374-20006586
Coord C2 exon
chr13:20019547-20019963
Length
213 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTATTTTTCTTTTAGATT
3' ss Score
10.61
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
AGATATAACTACAATGAAAGGAACCATTGTTGCTCAAGTGGATTCAAGTGAGTCCTTCCAGGAATTCTGTAGTACATCTTGTTTATCTCTCTATGAAGACAAACAGAATCCTACTAAAGGAGCTCTAAATAAATCAAGATGTACAATCTGTGGTAAACTAACTGAG
Seq A exon
ATTCGCCATGAAGTCAGCTTTAAAAATATGACTCATAAGCTGTGCAGTGACCACTGCTTTAATAGATATAGAATGGCCAATGGTTTAATAATGAATTGCTGTGAACAGTGTGGAGAGTACTTGCCCAGTAAAGGTGCTGGAAATAATGTTCTGGTGATTGATGGTCAACAGAAAAGATTTTGCTGTCAAAGTTGTGTCAGTGAATACAAACAG
Seq C2 exon
GTAGGTAGCCATCCAAGCTTCCTGAAGGAGGTTCGAGATCACATGCAGGACTCTTTCTTAATGCAGCCTGAGGTAAGCAGGAATGTAAATGGAGTTCAAGGCCTTAACATTTTTGAGCACTGCTACTACTGTCATTAATATGTATCTGAAAAATCTTGTCCAATTTGAAATATATTAAAATTTCCAAACTTAAATTGTATCAAATGATGAATGTTTTATCTCTGAGACATAGATTTCTAATTTCACTAATTTTACATGTATTTTCTTGTGATATGCTCATTTGTCTTTAGTTATTTATGTTCTTAGGAAATTATTTTCAGATTTTTTTAGTGCACAATACCTTGTACACAGTAGGCATTTAATAAAGGGATATAAAAATCCTCTCTTTTGTGCCTACCTGAAAAGTTAAAAAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121741_MULTIEX5-1/4=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(68.9=55.4),PF064679=zf-FCS=PU(40.0=28.6)
A:
PF064679=zf-FCS=PD(55.0=31.0),PF064679=zf-FCS=WD(100=62.0)
C2:
PF064679=zf-FCS=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATGAAAGGAACCATTGTTGC
R:
TAATGACAGTAGTAGCAGTGCTCA
Band lengths:
292-505
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains