Special

HsaEX0072925 @ hg19

Exon Skipping

Gene
Description
zinc finger, MYM-type 5 [Source:HGNC Symbol;Acc:13029]
Coordinates
chr13:20397622-20411961:-
Coord C1 exon
chr13:20411796-20411961
Coord A exon
chr13:20409617-20409829
Coord C2 exon
chr13:20397622-20399375
Length
213 bp
Sequences
Splice sites
3' ss Seq
AATTCTGGTTTTTCTTTTAGATT
3' ss Score
9.92
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
AGATGCATCTACAAAGAAGGCTAATGTCATTCTTCCAGTAGAATCAAGCAAATCCTTCCAAGAATTTTATAGTACATCTTGTTTGTCTCCCTGTGAAAACAACTGGAATCTTAAAAAAGGAGTTTTTAATAAGTCAAGATGTACAATTTGTAGTAAATTAGCAGAG
Seq A exon
ATTCGCCATGAAGTCAGCGTAAATAATGTAACACATAAACTGTGCAGTAACCATTGCTTTAATAAGTACAGATTGGCCAATGGTCTAATAATGAACTGCTGTGAACACTGTGGAGAGTACATGCCTAGTAAGAGTACTGGAAACAACATCCTGGTGATTGGAGGTCAGCAGAAGAGATTTTGCTGCCAAAGTTGTATTAACGAATATAAACAG
Seq C2 exon
ATGATGGAAACAAAATCAAAAAAATTAACAGCATCAGAAAATAGAAAAAGGAATGCTTTTAGAGAAGAAAATGAGAAACAATTATATGGATCGTCAAATACACTTTTGAAAAAAATAGAGGGAATCCCAGAAAAAAAGGAAAAGACTTCACAGCTACAGCTTTCAGTAGAATGTGGCACGGATACATTACTGATCCAAGAGAATGTGAATTTACCTCCTTCTTCCACGTCAACCATAGCTGATACATTTCAAGAGCAACTGGAAGAGAAAAATTTTGAAGACTCCATTGTACCAGTTGTGCTTTCCGCAGATCCAGGTACGTGGCCCCGAATTTTGAATATTAAACAACGGGACACTCTTGTTGAAAATGTTCCGCCTCAAGTAAGAAATTTTAACTTTCCAAAAGATAATACAGGGAGGAAGTTTTCAGAAACTTATTATACACGGATTCTTCCAAATGGTGAAAAAACCACTAGATCCTGGTTACTTTATTCAACCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132950_MULTIEX1-4/4=3-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (No Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.007 A=0.000 C2=0.179
Domain overlap (PFAM):

C1:
PF064679=zf-FCS=PU(40.0=28.6)
A:
PF064679=zf-FCS=PD(55.0=31.0),PF064679=zf-FCS=WD(100=62.0)
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCTGTGAAAACAACTGGA
R:
CGTGGAAGAAGGAGGTAAATTCACA
Band lengths:
308-521
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains
  • Pre-implantation embryo development