Special

RnoEX0102066 @ rn6

Exon Skipping

Gene
Description
zinc finger MYM-type containing 5 [Source:RGD Symbol;Acc:1306353]
Coordinates
chr15:37042396-37048294:-
Coord C1 exon
chr15:37048132-37048294
Coord A exon
chr15:37047262-37047468
Coord C2 exon
chr15:37042396-37043130
Length
207 bp
Sequences
Splice sites
3' ss Seq
GAAATTTTGTTTTCTTTTAGGTT
3' ss Score
10.91
5' ss Seq
GAGGTAATT
5' ss Score
8.88
Exon sequences
Seq C1 exon
AGATTCTCCTGTGAAACCCACAACTATTGTTCCTCCAGTGGAGTCAAGCAAGTCCTTACGAGAATTTCATAGTGCATCTCCATCTCCCTATGAAAACTGCCAGAGTCTTAGGAAAGAAGTTTTTACTAAGTCAAGATGTATAATCTGTAATAAATTAGGAGAG
Seq A exon
GTTCGCCATGAAATCAGTGTTAACAGTATAACACATAAACTGTGTAGTAACAGTTGCTTTAATGAATACAGATTGACCAATGGTCTCATAATGAACTGCTGTGAACAATGTAGCAAATATATGCCCAAGAGTACTGGACACAGCATTCTGATTACAGGACAGCAAAAGAGATTCTGCTGCCTGAGTTGTGCTGACGAATATAAAGAG
Seq C2 exon
ATAATGGAAGCAAAATCAAAAATACTGCTTTTACAAAACAGAAAAAGGAATGCCATCAGAGAAGAAAATGAAAAAAAATTATATGAATCATCAAAAACACTTTCAGGAAATACAGGAGAAATACCAGAAAAAAAGGAAAAGATTTCAGAAATAATAAAAGTTGCAGCAGACTGTAGCCTAGATACATCATCAGAGGAACGGAATGTGAATTTACCTTGTTCTGTGGCAGCAGTATCTGATAAATTTCAAGAGCAACTAGGAGACAAAAATTCAGAGGAATTTGATGCATCTGTTGTACTTTCTTTGGATCCAGGTTCATGGCCCCGAATTTTGAATATGAAACAACGTGAATTTCTTGTCAAAACAGAGCCACCTCAAGTAAGAAATTTTAATTTTCCAAAAGACAGTATAGGCAAGAAGTTTTCAGAAACATACTACACACAGATTCTTCCAAATGGTGAGAAGACCACCAGATCCTGGCTACTCTATTCAGTCTCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029220-'13-13,'13-9,14-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.127 A=0.000 C2=0.074
Domain overlap (PFAM):

C1:
PF064679=zf-FCS=PU(40.0=29.1)
A:
PF064679=zf-FCS=PD(55.0=31.9),PF064679=zf-FCS=WD(100=60.9)
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTGGAGTCAAGCAAGTCC
R:
GGCTACAGTCTGCTGCAACTT
Band lengths:
307-514
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]