BtaEX6056663 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007167 | ZMYM5
Description
Bos taurus zinc finger, MYM-type 5 (ZMYM5), mRNA. [Source:RefSeq mRNA;Acc:NM_001195018]
Coordinates
chr12:36494836-36503478:+
Coord C1 exon
chr12:36494836-36494905
Coord A exon
chr12:36502642-36503146
Coord C2 exon
chr12:36503385-36503478
Length
505 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCTTTTCTGTTACAGGTT
3' ss Score
13.22
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GGCCAGGAATCACCTTCAGGACAGTCTGGTGATAGTTCGGTGATAGTAATTAAGGAGGAAAGCGTCGACG
Seq A exon
GTTCTTTGGCATGGGTGAATGTTCAGCAGGAAGATTAGACTTGACTGAACAGACTCCTATCTTATTAGGGAGTAAAGCCATGGCAGCTAGTCTCATGGATGTAGGAGACTCATTTGGTGACCCAGCTAGTCCGTTAGTTAATAGATCTAGAAACTCATTGGTGGAAGGTGATAATGGTGATGATGATGATGTTGTGTTTATTGAATCTATACAACCTCCTTCAAGTTCTGCTCCAGTAATAGCTGATCAAAGACATTTTGTATTTCCTGCATCAAGAAATAAAAAGCTTCAAGGACATTATTCTGTAATTCTTCCTTCCTCAAGATATTTGGCTTCTCAGAAGGGAAATACAAGTGAGACAATTGTTATTGATGATGAAGAGGACATGGAAACAAATGGAAGGGAAAAGACAGTTTCTTCCAGTTTTATTGAATGGGGATTTCCTGGAACTAAAAACAGAACCAAAGATTTGGATTTCTCCACTTCCAGTCTTTCAAGAAGTAAG
Seq C2 exon
ACCAAGACTGCAGTAGGACCTTTTAATCCTGGTAGAATGAATGTGGCAGGAGGTGAATTTCAGAATGGAGGATTTACAACTCATCATAGTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007167-'7-4,'7-3,10-4=AN
Average complexity
A_S
Mappability confidence:
89%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.436 C2=0.969
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 1 annotated functions for this event
PMID: 16524884
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: two hybrid. ELM ID: ELMI002796; ELM sequence: ETIVIDDEED; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]