MmuALTD0016371-2/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000054715 | Zscan22
Description
zinc finger and SCAN domain containing 22 [Source:MGI Symbol;Acc:MGI:2443312]
Coordinates
chr7:12897777-12908239:+
Coord C1 exon
chr7:12897777-12897877
Coord A exon
chr7:12897878-12897943
Coord C2 exon
chr7:12906234-12908239
Length
66 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
3' ss Seq
GCTTTTTGATTTAATTCCAGGAT
3' ss Score
7.16
Exon sequences
Seq C1 exon
TACTAGGCACTTTGGGACTTGTGGTCCCTGGGCACGAAGGCGCATGTGTGTGCGTCACCAGGACGCCTTTGGAAGTGTCCGCTGGGAGTTCTGGAGACCCG
Seq A exon
GTGAGCGCGGGAACCCTGGCATGGAGGGGTGAGGGCTGCGAACGCCCACGGCAAACCTAACGGCCT
Seq C2 exon
GATGGGAGCCAGGAGTGGAACGTGAAGAGGCAAGTTGCAAACAGAGCAATACAGATGAATTGGAGCCACCAAAAATGGCGACTGAAACTGTCATGGGAAGCGTTTTGCCAAAATCTACCCTTGCCCACACTTGTAAACCTGAGAGCCACTCAGAGAGCCAGCCAGAATTCCTAGGAGCACTCTGGATGAAGTCTACTGCCCAAGAGATGGATTTCAGAAAAGCTCTGGGGCCTCACATGGATGCCCCCAAAGACCAGCCTGGCCATGAGTCTAACACCTCAGGAAACGGTTCCAACATGTGGCCCAACTTCCCTTCCCAAGACAAGGCTTCTTCAGAGGAGAAATTTGGCCCATTACTTGATAATGAGACAGTGCCTCCAGATACTTGCTCAGAGAAGAAATCCTCCAAGGATAGTGAATGTTTGAAAACATTCCAGAACACTTCAGCTCTGGAGGCCCACCAGAAGAGCCACTCTCAGAAGACGCCCTATGCCTGTACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054715-0-4,1-4,2-4-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.436
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PD(2.1=0.6),PF134651=zf-H2C2_2=WD(100=7.2),PF134651=zf-H2C2_2=WD(100=7.2),PF134651=zf-H2C2_2=WD(100=7.2),PF134651=zf-H2C2_2=WD(100=7.2),PF134651=zf-H2C2_2=WD(100=7.2),PF134651=zf-H2C2_2=WD(100=7.2),PF134651=zf-H2C2_2=WD(100=7.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGACGCCTTTGGAAGTGTC
R:
GGGCAAGGGTAGATTTTGGCA
Band lengths:
169-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types