MmuINT1035901 @ mm10
Intron Retention
Gene
ENSMUSG00000054715 | Zscan22
Description
zinc finger and SCAN domain containing 22 [Source:MGI Symbol;Acc:MGI:2443312]
Coordinates
chr7:12897815-12904085:+
Coord C1 exon
chr7:12897815-12897943
Coord A exon
chr7:12897944-12903600
Coord C2 exon
chr7:12903601-12904085
Length
5657 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
3' ss Seq
CCTCCCCTCCCTTCTTTCAGATG
3' ss Score
13.46
Exon sequences
Seq C1 exon
GGCGCATGTGTGTGCGTCACCAGGACGCCTTTGGAAGTGTCCGCTGGGAGTTCTGGAGACCCGGTGAGCGCGGGAACCCTGGCATGGAGGGGTGAGGGCTGCGAACGCCCACGGCAAACCTAACGGCCT
Seq A exon
GTGAGTACAGGACAGAGTGTGTCACGGCTGATGGAGTGTAAGTCTGACAAACCAAAAGCGGGACTGGCCGACCGGTTGTATGTGTCCGACAGGTTGTGCTACGTCTGATGCGTCGTGGCCTTGGATATCTCGTCGAGTGACTGATGAAGCCACCGACAGAAATAGCTTTTCGATGGACTTTAAGATGGGTTTGTAGCCAGGCGTGGTAGCGCAAGCCTTTAATCCCAGCACTCGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCTAGGGCTACACAGAGAAACCCTGTCTCGAAAAACCAAAAAATAAAAATAAAATAAAATAAAAAATAAATTTAAAAAAGATGAGTTTGTAACGAGTTCAGCCATGAGTGAAATCCTCTGTGTCTGGTTGAGATGCTGACTAACATGGTCTTCCTGCCTCTGCCTCCCAAGCCACCACGCCAAACATTTCAGCTGCTTTATTTACTTATTTTTATTTTATATGCATTGGAATTTTGCCTGCAAGTATGTGTGTGAGGGTGCCAGATCTTGGAATTACAAACAGTTGTGAGCTGCAATGTGGGTGCTGGGAATTGAACCTGGGTCCTGTGGAAGAGCAGCCAATGAATGCTCTTAACCACCCACTGAGCCACCTCTTCAGCCCCTTGAGCTGCTTTAATTCCACCATAAAATGTATATTAATTGAGCCAGCCATGGTGGCACATGTTCTTTTCGAAGCCAGCCTCATCTATGTATCAAGTTCCAGGCCATCCAGGACTTTATAGTAAACCCCTGTATCCTGGTTGGGTTGGGTTGGGTTGGTTGGGTTGGTTGTATACAACTTGATGAAAGCTAGCGTTATCTGAGAAGAGGAACCTCCATTGAGAAAAGGCCTCCAAGAGATGACTTGTAGGCAAGTCTATAGGGGCATTTTCTTGATTAATTATTGACGTGGGAGGACCCAGTCCAGGTGCCACCCCTGAGTAGGTGATCCTGGGTTATATAAGAAAACAGACTGAGCAAGCCTTGGGAAGCAAGCATTCCACCACAACCTCTGCTTCAGTTTTTGCAACCAGGTTCCTACCTTGAGTTTAACCTGACTTCCTTCAAAACTGGTAATTTGTGAGGAAAATAAGCCCTTTCCTCCCCAACTTGCTTTTGACCAATGTTTTATCACTGCAAGAGAAGGTGCAAACTAAGACAACCCTGTCTCAAAATATACACACACACACACATCACACATGCATATATAATAGATGTGTGTTTACTATGTAGTAATTTATATTAATATATATATTTATTTGCTGGTTTTAGCTTGACTAATTTTTTAAAAATTTTTTCTGGACTATTAGTTTGTACTTGGGATTTACTACAATATCAGATACAATATGGCATTTCTGGGGTATACTTAAGTGTTCTGGTGACTAAGGGAGGTCCTGCTGCTATGCTATATAATAGGAACAGAGTGATGAAGTCCTGCACTGTAAGTACCAAGTCTCTGAAGGAAGTGCTGTCCCTTTCCAGATGTTAGTAGCTTCCCTATCTAGAAATGGGGATTGATTCCGAAGCAAACTAAAATTGAAGTCAGCAGGCAAGAGGAATGTAAGTTCTATTATGTAAGGAGAGCTAGTCTTAAAATGAAGTGTAATATTGAGCCAAAACACATGACCATTTTAAAGCTCTTCCTATATTATATATGTGTGTACATGTGTGCACACACAGAGAAGCCATGGCCCATGTGTAACAAAGATCAGGAGACAAGTTAAAGCAGTTGGTTCTGTCCTTTTACCATACGGGTCTTAGGGGTTGGAGATAGGTTGTCAGGCTTGGCGGCAAGCACCTTTACTTGCCAAGCCATCTCCCCAACCCATACTGTGTTTTTTGTAAAGGGCATTTTAGCTGACTGTCACCTACTAGGAATGTGTGAAGTGGGTTCTTACCAGCCCCAAGCAGCACTCGTTGTTTACTGTTCTTCTGCGGTTTGGAAAGGCTGAACGTCATCCCCCATAAAGAAAGACTGGAGGGCATCATTTGTGAGGTCCAAGACCAGCTCTCCACCTGCTGACAGAAAATAACCCTAGAGGTTAATGCAGTTCCCCAGCTTTTTTTTTTTCTTAGATTTATTTATTTATTGTATGTAAGTACACTGTAGCTGTCCTCAGATACTCCAGAAGAGGGCATCAGATTTCATTACGGATAGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTTGGGACCTTTGGAAGAACAGTTGGCGCTCTTAACCACTGAGCCATCTCGCCAGCCCCCTCCCCAGCTTTTAATATGGAAACAGTAATACTGTCTCATAGAGGATCATGTGTTAACAGACACAAGAGGCTAGGGTCACCTAGCATATAGTTAGTTCCCAGGGCCTGTCCTTATTTTCTCCTATTCCTGTCCCACGTTGTAACGTACTTGTTCTTTTATCAGCCTGTCCATATCAGTCTAGTAAAGGCATTGAACACGGGTCCCATGTCTTCCTCATCTTGGCATCCTTAGCAGAGCTGGGTACCAAGAAGATACTCAATGAAGATTCATTAAGCAAAACTTGCGTTTACATATGTGTAGACAATAAGGTAACTGAAGCCCCTTTACCTGCTTAGTACATCTCTCTGCCCCCTCCTTTTTGTGGGACAAGCAGTGGCTTGCTAGGTAGCTCACAGTCTTCAAATCCTCCTGCTTCATCCTCCCATGTGTGATTATCTTGCCCTTGGTCCCTTATCCTCTTCCCCCTCTCCACATTCACCTCCCCCTTCTCCACGTGCACATGACCGGCCTCTCTCCCTCCCTCCCTCCCTCTCCCCCCCTCTGCTTTCTTCTTAACTCCCCTCCCCATGCCATAAATAAACTCTATTCTATAAAAAAAAAAAAGAGCCCCTGCAGTGAGGGCAGATGGATAATAAACAAGCAATCATATAATTGTGCCATATGTCAGGTGGTAAAGAGCAATAAGAAATAAAGCAGAGTAGAGGGCAGAATCTCTGCAGAGTTATCTTTTTGTATAGAGGCCTATTTATGTATTGTTGAGAAAGAAAAGTCTTGCTCTGTAGCCCAGGATGGCCTTGAACTTTCAGTCTTCCTGACTTAGCCTGCTGAGTTGTGAGATTATAGCTATGTGTCCCTATTAGAAAGAACCACAACAGAAATTAGAAAATATTTTAAACTAAATGAAAATGAAGTTGGGTATATATAATAGTACATGCTTATAATCCCAGTACCCAGGAGGCTGTAGCAGAATTTCCATAAGGCCATCATGGTCTATATAAAAGGTCCTGACTCAAAAAACTAATATAAAAATGTAGATAGAACTTATCAAAATTATGACATACAACTAGAGCTTTTGGAATAAAATGTATAGCTTTAAACACATGCACTTTATTTTAGACTTTTATATTTATTATGTATACACACACATACACACACACACCACAGCATAACATCTTAAAGAGTCAATCTTCTCCTTCCACTCTGCGGGTCCTAGGTATGAAACGTTTGTCATAAGACTTGGTGGCAAGTGCCTTACATGATAAACCATCTTGCTGGCCCAAATACATACATTTGTAAAGAAGCAAGGTAGTCAGGCATGGTGGGGCATGCACTGGGGATGAAGGGGAAGGACAGTGAACTGGAAGCCATGCTAGCTACATAGCAACACACACAGACACACATATACACACACCTACACACACCTAACAGAATAAATCACCGTGGGATTACCAGGTCGAAAGATAAGAAAATAGGAACTGTATAAGTGACAGGAGACATGGCTTTGTGGCTTTGTGGCTAGCTGTGGGCTGGCTTGCGTTTGCAGCTCACTCGCCTGCTGATCCTTCCCTAGCTGGGAGACTTGGAGAGGATCCTTTCATTCTGTCTGCCTTCACCTAAAATAGGAATACAACTTGTCCCTTGAGTTTGTTTCTTTGCGTTTTGGTTTGCTTTGGTTTAGGTTTTGGTTTTTGAGACAGGGTATCTGTATATAACCCTAGCTGTCCTGAAACTCACTCTGTAAACCATACTGGAATTGGATTCAAAGATACACCTGCCTCTGCCTCCCATGCTGAGATTAAAGGTATTGGCCAGCTCCGCCCTGCTGTCGGGGGGAGGGGGGGAGATTATGAATATATATATATATATACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACTCACAAGAAAGACCTTGCAGGATGAATTTTAGGCTTCTCAGCATTGACCAGCCTCTCGAGGGCTGAATGCTAGCAGCTCCTAGAAGCTCTTTTTATTGTTTCTAAATGGCACTGTTATCAGTTCTGCATACCAAAACTTACTTGATCTAGGGCTTGTCTTGAGTAATTTCTTTTTCTTTTTTTAAGATTTATTTATTATTATATCTAAGTACACTATAGCTGTCTTCAGACACTCCAGAAGAGGGCATCAGATCTCATTACGGATGGTTGTGAGCCACCATGTGGTTGCCGGGATTTGAACTCAGGACCTTCGGAAGAGCAGTCAGTGCTCTTAACCTCTGAGCCATCTCTCCAGCCTGGAGCTTATCCTGAAAGAACCATCACCTTAAGCAATTTACAGCCATATTAGACTTCCTGATTTGCCAGGCATGTCTCAAGACTAATTATGCAAAGGCTCTGAGGATCCTTTAAAAGACTCGCTCCATAAATCTCAGATAGCAATCACTGACAAAAGGCTGCTTCAAAACTTAGGTGCCGCACGCACTCCATATTCATGCCAGATACAACACAACAGTCCTGCTAAAATTCTGCTACAATACTGTTTGTATATGTACGATTGTTTTGCCTACATGTGTGTCTGTGTACCACACGTATGCCCGGTGCTTGTGGAAACCAGAAAAGGGTGACCTGACATTGGAATTACAGACACTTGTGGGCCCCTATGTGCGTGCTGGGAATGAAACCCGAGTCCTCTGTAAGATAATCCAATCTTCTTTACATTTTTATTTTATTTTATTTTATTTTTGGTCAGGATCTCTTAATCTCAGCCCCTAAGATGATACTTTTATTTTTATATATGGTACTCAAGCCGGAGTCAGTTCTCTTCCTTCCACCAAAGTGGTTCCTGCACCTTTACCTGTGGAGCCATCTCATTGCCCCCTCCCCTTCTAACTTCATTGAACTTGTTCTTTGATAACTCCATCCATGTATACCCTGCATTCTGATTACTGTAACACACACACACCCAGTCTTCCTCCCACCTCAGTTATCCCCGCCCCCCATCCTCCTTGCAAATCTTCCTACGCTCATGACTGTTTCGTTTTTTAAAATTTAATCAGGATCATCTGTAACCGTGGATCTGAAACTTTCTGCTGGAGCTTAGTGGGTTCCCCTCTGTTGTATATTATGAATGCATGGGACCACTGAGTGTCCTCATTTGTTCTGAGTGGGCGCTGACATGGTCATTATACTCATCTTTTTCTAATGTGACAATGAGTGTATTGGTGGCAAGCACCTTTACCAGGTAATCCATCTCGCTGGCCCAAATACATACGTTTAAAAAAGCAGGCATGGTAGTACATGCACGGGATGAGGCAGGACGATAGTGAACTGGAAGCCAGCCTGGCTGTCTCAAGCCCGCACCTCCCCTCCCTTCTTTCAG
Seq C2 exon
ATGGTGATGAAGCTCTAACGTTTCTTCAGCCCCAATTCTGAGGCTTGAGTCGTCCCTGTGACTCACTGAATTCTTCTGCCCAATGGCCATCCCCAAGAGCCCTCTGAGCCCAGTACTCTGGGAACAGGATAGCTTCCTTCAGGTGAAGGTGAAAGAGGAGGAAGAAGCTAGCGACTCCCCGAGCCAGGAATCCAGCCCTAGCTTTACTGCCCACCCTGAGGCTGCACGATTGCGCTTCAGGCACTTCCGCTATGAGGAGGCATCCAGCCCTCATCAGGCGCTAGCCCAACTGCGAGAGCTATGTTGCCAGTGGCTGAGGCCAGAGTCGTCCTCCAAAGAACAGATGCTGGAGTTGCTGGTGCTGGAGCAGTTCCTGGGTGCGCTGCCCCCTGAGATCCAGGCCTGGGTGGGTGCTCAGTGCCCAAAGAGTGGAAAGGAGGCTGCCGTTCTGGTGGAGGATATGACTCAACTGCTGGACAGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054715:ENSMUST00000055528:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.220
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(96.8=68.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types