MmuALTD1001817-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000004633 | Chn2
Description
chimerin 2 [Source:MGI Symbol;Acc:MGI:1917243]
Coordinates
chr6:54097720-54173502:+
Coord C1 exon
chr6:54097720-54097773
Coord A exon
NA
Coord C2 exon
chr6:54173464-54173502
Length
0 bp
Sequences
Splice sites
5' ss Seq
TTGGTTGGT
5' ss Score
2.01
3' ss Seq
TCTCTCTCTCTTCATTCTAGATG
3' ss Score
11.58
Exon sequences
Seq C1 exon
TTGTGATGAGATCCTGCGAGAGAGGAATGAAGGACGTGATGGGTGACTGACTTG
Seq A exon
NA
Seq C2 exon
ATGCTGAGGAATACCAGCCTCCAATATGGAAATCATACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004633-7-9,8-9-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTGATGAGATCCTGCGAGAG
R:
TCCATATTGGAGGCTGGTATTCCT
Band lengths:
84-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types