MmuEX1002523 @ mm10
Exon Skipping
Gene
ENSMUSG00000087670 | 9530036M11Rik
Description
RIKEN cDNA 9530036M11 gene [Source:MGI Symbol;Acc:MGI:1925866]
Coordinates
chr6:54149520-54150937:-
Coord C1 exon
chr6:54150802-54150937
Coord A exon
chr6:54150537-54150604
Coord C2 exon
chr6:54149520-54150238
Length
68 bp
Sequences
Splice sites
3' ss Seq
GTCTCAACTTGTTATTTTAGGTG
3' ss Score
8.79
5' ss Seq
AGAGTTAGT
5' ss Score
0.9
Exon sequences
Seq C1 exon
AGTCTACTGTCCAACTCATTTCGACTTATTTGGACTTGGAAAGAAACACTTCTCAGTCTGCAATGAGCCATTCCAGACACTTGTCAAGTTGGACCAACTACAAGAAGGCTTTCCTCGATTCATTGCAACTTCCCAG
Seq A exon
GTGACTGTGAGCTGTGACCCCTTCCCTCACAGCAGAAGGCTCAGGAGAAACAAGCCTGCTTCTTGAGA
Seq C2 exon
AAATACAGCCCTGGTCACACTCTCAAAAGAAAATGCTTTTGCAGGGTCTCTATGTGAGTGATTTCTGGCCACTCAGACTTCACACAGAGAGAAAAAGACCCTCAACACACTCCCCCACCCCCACCTCCACCCTCAAGAGCAAGAACTTGCAGAGCAATGAGCCTTGCCTAAAAAAGGAAGTAGTTGCTGAAGTTGGACGGAGAACGGTCATGCAGAAAATATGGCTCAAACTGTTGCACTCTGAAGAGGACAGGGAGAGTCCTCTTCATGAAGCCATACAGACACAAGGCTTGTTTTAAAGATTCACAGCGTGAAGCAAAACCTCAGCTATAATCCCAATACTTTCAGGAGGACAAAACTGTGACTTTGAGACCAGCCCAAACTACAATAATTATGAGGCTAGCCAAGGGCTATGTGGCAAGCTCTCATCCAAAACAAAAACAAACAACTCAAATAAAACTGATTCACCGGTTGCAACATTAGAATTCCAAACACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000087670-'0-1,'0-0,1-1
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTCTGCAATGAGCCATTCC
R:
TGTGAAGTCTGAGTGGCCAGA
Band lengths:
168-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types