MmuALTD1004571-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000018581 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:117987320-117995290:-
Coord C1 exon
chr12:117995129-117995290
Coord A exon
NA
Coord C2 exon
chr12:117987320-117987553
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTACGT
5' ss Score
10.2
3' ss Seq
ATGTAATATCTATGTTTCAGCCA
3' ss Score
5.75
Exon sequences
Seq C1 exon
ATGGTTTTTTGTTTCTCACCGGTTGGCCACACACTGCGAGTTAGAGCCCGGAAGTTCCCAGCCATAGTTAACTGCACAGCTATTGACTGGTTTCATGAATGGCCACAGGAGGCTCTGGTCTCAGTCAGCAGGAGGTTCATCGAAGAAATTGAGGGGATTGAG
Seq A exon
NA
Seq C2 exon
CCACAGCACAAAGATTCTATCAGCCTTTTCATGGCTCATGTTCACACCAGTGTAAAGGAAGTGAGTGCCTGGTACTACCAGAACGAGAGAAGATACAACTATACCACCCCCAGGAGTTTCTTAGAACAAATATCACTGTTTAAGAGCCTGCTGAAGAAGAAGCGAGAAGAGGTAAAACAGAAGCAGGAGCACCTGGGGAATGGAATCCAGAAGCTGCAGACTACAGCCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581-69-65,70-65-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.153
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(19.8=100)
A:
NA
C2:
PF127802=AAA_8=PD(18.7=64.1),PF127772=MT=PU(4.3=19.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGTCTCAGTCAGCAGGAG
R:
ACACTGGTGTGAACATGAGCC
Band lengths:
102-122
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types