MmuALTD1004571-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000018581 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:117987320-117995290:-
Coord C1 exon
chr12:117995129-117995290
Coord A exon
chr12:117995109-117995128
Coord C2 exon
chr12:117987320-117987553
Length
20 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
ATGTAATATCTATGTTTCAGCCA
3' ss Score
5.75
Exon sequences
Seq C1 exon
ATGGTTTTTTGTTTCTCACCGGTTGGCCACACACTGCGAGTTAGAGCCCGGAAGTTCCCAGCCATAGTTAACTGCACAGCTATTGACTGGTTTCATGAATGGCCACAGGAGGCTCTGGTCTCAGTCAGCAGGAGGTTCATCGAAGAAATTGAGGGGATTGAG
Seq A exon
GTACGTTGCGTCAGCCTGAG
Seq C2 exon
CCACAGCACAAAGATTCTATCAGCCTTTTCATGGCTCATGTTCACACCAGTGTAAAGGAAGTGAGTGCCTGGTACTACCAGAACGAGAGAAGATACAACTATACCACCCCCAGGAGTTTCTTAGAACAAATATCACTGTTTAAGAGCCTGCTGAAGAAGAAGCGAGAAGAGGTAAAACAGAAGCAGGAGCACCTGGGGAATGGAATCCAGAAGCTGCAGACTACAGCCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581-69-65,70-65-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.153
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(19.8=100)
A:
NA
C2:
PF127802=AAA_8=PD(18.7=64.1),PF127772=MT=PU(4.3=19.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGTCTCAGTCAGCAGGAG
R:
ACACTGGTGTGAACATGAGCC
Band lengths:
102-122
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types