MmuALTD1005731-1/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000020435 | Osbp2
Description
oxysterol binding protein 2 [Source:MGI Symbol;Acc:MGI:1921559]
Coordinates
chr11:3715088-3715551:-
Coord C1 exon
chr11:3715497-3715551
Coord A exon
NA
Coord C2 exon
chr11:3715088-3715234
Length
0 bp
Sequences
Splice sites
5' ss Seq
AATGTATGT
5' ss Score
5.87
3' ss Seq
CGTGCCTGTTCCTCTGGCAGGTA
3' ss Score
11.41
Exon sequences
Seq C1 exon
AAAGCCTGAGAGTGGACCTGGGACCACCACTGTGGACTGGACCTCAGCAGATAAT
Seq A exon
NA
Seq C2 exon
GTATTAGATGGTGCCTCATTCATGCCCAAGAATTCATGCAAAGTTAAGAGGCGAGTCCGCATCCCTGACAAACCCAACTATAGCCTTAACCTCTGGAGCATCATGAAGAATTGTATTGGCCGAGAGCTTTCCCGGATCCCCATGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020435-33-16,34-16,35-16-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.789 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0123713=Oxysterol_BP=PU(5.0=38.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACTGTGGACTGGACCTCA
R:
AGTTGGGTTTGTCAGGGATGC
Band lengths:
108-117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types