RnoALTD0021022-1/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000019645 | Osbp2
Description
oxysterol binding protein 2 [Source:RGD Symbol;Acc:1310505]
Coordinates
chr14:83954679-83955146:-
Coord C1 exon
chr14:83955096-83955146
Coord A exon
NA
Coord C2 exon
chr14:83954679-83954825
Length
0 bp
Sequences
Splice sites
5' ss Seq
AATGTACGT
5' ss Score
6.58
3' ss Seq
CATGCCTGTTCTCCCGGCAGGTA
3' ss Score
13.13
Exon sequences
Seq C1 exon
CCTGAGGGTGGACCTGGGACGACCTCTGTGGACTGGACCTCAGCAGATAAT
Seq A exon
NA
Seq C2 exon
GTATTAGATGGTGCCTCATTCATGCCCAAGGATTCATGCAAAGTGAAGAGGCGAGTCCGGATCCCTGACAAACCCAACTATAGCCTTAACCTCTGGAGCATCATGAAGAATTGCATTGGCCGAGAGCTCTCCCGGATCCCCATGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019645-39-23,40-23,41-23-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.789 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0123713=Oxysterol_BP=PU(5.0=38.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTGTGGACTGGACCTCAG
R:
GTTGGGTTTGTCAGGGATCCG
Band lengths:
107-116
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]