MmuALTD1006093-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000020696 | Rffl
Description
ring finger and FYVE like domain containing protein [Source:MGI Symbol;Acc:MGI:1914588]
Coordinates
chr11:82812400-82818471:-
Coord C1 exon
chr11:82818416-82818471
Coord A exon
NA
Coord C2 exon
chr11:82812400-82812810
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
CTGTCTCTTGCTCTAAGCAGCAG
3' ss Score
5.5
Exon sequences
Seq C1 exon
GCTCGGAACCTAGCTGCAAGGCCTGCGGGGTCCATTTCGCAAGCACAACCCGGAAG
Seq A exon
NA
Seq C2 exon
CAGACCTGCTTGGACTGTAAGAAAAACTTCTGCATGACTTGTTCGAGCCAAGAGGGGAATGGGCCACGCCTCTGCCTTCTCTGCCTACGGTTCCGAGCCACGGCCTTCCAGCGGGAGGAGCTCATGAAGATGAAGGTGAAGGACCTGAGGGACTATCTCAGCCTCCACGACATCTCTACGGAAATGTGCCGGGAGAAAGAGGAGCTGGTGTTCCTGGTGCTTGGCCAGCAGCCTGTAATTTCTGAGGCGGACAGGACTCGTGTTCCCCACTTGCCCCAGGCCTTCCCTGAGCAGCAGGCCTTCCTGACCCAGCCTCAAACCAGCACAGTGCCTCCTACCTCACCTGGCCTCCCTTCTTCACCTGCACAAGTCACCTCTGTCCCCTTAGCCCAGGATCAGGAAACTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020696-16-17,17-17-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.152 A=NA C2=0.359
Domain overlap (PFAM):
C1:
PF0231811=FYVE_2=PU(29.9=31.7)
A:
NA
C2:
PF0231811=FYVE_2=PD(67.2=32.8),PF102084=Armet=WD(100=48.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCATTTCGCAAGCACAACC
R:
TGGGGAACACGAGTCCTGTC
Band lengths:
296-535
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types