MmuALTD1006093-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000020696 | Rffl
Description
ring finger and FYVE like domain containing protein [Source:MGI Symbol;Acc:MGI:1914588]
Coordinates
chr11:82812400-82818471:-
Coord C1 exon
chr11:82818416-82818471
Coord A exon
chr11:82818177-82818415
Coord C2 exon
chr11:82812400-82812810
Length
239 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
CTGTCTCTTGCTCTAAGCAGCAG
3' ss Score
5.5
Exon sequences
Seq C1 exon
GCTCGGAACCTAGCTGCAAGGCCTGCGGGGTCCATTTCGCAAGCACAACCCGGAAG
Seq A exon
GTAAGTGCCATTGCACCATGACCCCAGGACTCAGGCCAGCTACCTGATCTCTCTACCTCTGTGGTGCTGGGGACCCAGGCCTGTCCTAGAATGTTCCAAGTGAAGGCAAAGCCTCTCAGCATAGACCCCGGAACTCAGACAGCAGCATAGACCCCGGAACTCAGACAGCAGCGTCACTGCTCGCAAACTGTACGGCTGAACCCCATCTATGAGGCGCCCTTTCTAGTGCTGGGAACGAG
Seq C2 exon
CAGACCTGCTTGGACTGTAAGAAAAACTTCTGCATGACTTGTTCGAGCCAAGAGGGGAATGGGCCACGCCTCTGCCTTCTCTGCCTACGGTTCCGAGCCACGGCCTTCCAGCGGGAGGAGCTCATGAAGATGAAGGTGAAGGACCTGAGGGACTATCTCAGCCTCCACGACATCTCTACGGAAATGTGCCGGGAGAAAGAGGAGCTGGTGTTCCTGGTGCTTGGCCAGCAGCCTGTAATTTCTGAGGCGGACAGGACTCGTGTTCCCCACTTGCCCCAGGCCTTCCCTGAGCAGCAGGCCTTCCTGACCCAGCCTCAAACCAGCACAGTGCCTCCTACCTCACCTGGCCTCCCTTCTTCACCTGCACAAGTCACCTCTGTCCCCTTAGCCCAGGATCAGGAAACTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020696-16-17,17-17-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.152 A=NA C2=0.359
Domain overlap (PFAM):
C1:
PF0231811=FYVE_2=PU(29.9=31.7)
A:
NA
C2:
PF0231811=FYVE_2=PD(67.2=32.8),PF102084=Armet=WD(100=48.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCATTTCGCAAGCACAACC
R:
TGGGGAACACGAGTCCTGTC
Band lengths:
296-535
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types