MmuALTD1010088-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000024276 | Zfp397
Description
zinc finger protein 397 [Source:MGI Symbol;Acc:MGI:1916506]
Coordinates
chr18:23957055-23964671:+
Coord C1 exon
chr18:23957055-23957193
Coord A exon
chr18:23957194-23957196
Coord C2 exon
chr18:23960016-23964671
Length
3 bp
Sequences
Splice sites
5' ss Seq
GTGGTAGGA
5' ss Score
4.71
3' ss Seq
GTTTTGCTTTACCATTTCAGATG
3' ss Score
9.4
Exon sequences
Seq C1 exon
GTCCCAGATAATCTACAAGGACCGTCAGTGTCATGGAAAGATTTGACATATCTCAAAACATCCCAAGATTCAACCAGCATCCAAGTCCGGCCTTTGAAGACACAGCTGAAATCCTGGAATCCTTGCCTTTCCTCTAAAA
Seq A exon
GTG
Seq C2 exon
ATGCTAAGAATAATGAATCAACAGCAAAAGAGGACATTTCAGAAGAAAAAGCACCAGAACTCTCTTGGGATCCTTCATGTAGAGGTGTCAGTGAGCACAAAAGCAATTTAGAATGGCAGCAAAGAAGTTCCCCTGTCCACAGGGGCAGTTTTAGTCAAGTGATCTTCACACACAAATCCTTAGCAAAGAGAGACCATCTTGATGAATCTCAAAGATGCTTGATTATAAGTACAAACTCTGTAACATGTCAGAAAGTCTCTACAGATGACAGACCTTACAGATGTGATGTATGTGGGCATAGCTTTAAACAACATTTCTCTCTAACACAACATCAGAGAATACATACTGGAGAAAAGCCCTATAAATGTAATCAGTGTGGGAAGGCCTTTAGTTTGAGGTCATATCTTATTATTCATCAGAAAATCCATAGTGGTGAAAAAGCATATGAATGCAATGAATGTGGAAAGGCCTTCAATCAGAGCTCAGCTCTCACTAGACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024276-12-4,13-4-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.177 A=NA C2=0.117
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.6),PF134651=zf-H2C2_2=WD(100=7.6),PF134651=zf-H2C2_2=WD(100=7.6),PF134651=zf-H2C2_2=WD(100=7.6),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.6),PF0009621=zf-C2H2=WD(100=6.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGGAATCCTTGCCTTTCC
R:
TCCCAAGAGAGTTCTGGTGCT
Band lengths:
98-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types