HsaALTD1040514-2/4 @ hg38
Alternative 5'ss
Gene
ENSG00000186812 | ZNF397
Description
zinc finger protein 397 [Source:HGNC Symbol;Acc:HGNC:18818]
Coordinates
chr18:35243152-35249803:+
Coord C1 exon
chr18:35243152-35243290
Coord A exon
chr18:35243291-35243293
Coord C2 exon
chr18:35245262-35249803
Length
3 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGG
5' ss Score
6.13
3' ss Seq
TTTGCTACTTATTGTTTCAGATT
3' ss Score
9.03
Exon sequences
Seq C1 exon
GTCCCAGCTAGTCCACAGGGACCAGCAGTGCCATGGAAGGATTTAACATGTCTCAGAGCATCCCAAGAGTCAACAGACATCCACCTCCAGCCCTTAAAGACACAGCTGAAATCCTGGAAACCATGCCTTTCCCCTAAAA
Seq A exon
GTG
Seq C2 exon
ATTGTGAGAACAGTGAAACAGCAACAAAAGAGGGCATCTCAGAAGAAAAATCACAGGGACTCCCTCAGGAACCTTCATTTCGAGGAATTAGTGAGCATGAAAGCAATTTAGTGTGGAAGCAAGGAAGTGCTACAGGGGAGAAACTAAGATCTCCTTCCCAAGGGGGCAGTTTTAGTCAAGTGATCTTCACAAACAAATCTCTAGGAAAGAGAGACCTTTATGATGAGGCTGAAAGATGCTTGATTCTAACTACAGACTCTATAATGTGTCAGAAAGTTCCTCCAGAAGAGAGACCTTATAGATGTGATGTATGTGGGCACAGCTTCAAGCAGCATTCCTCTCTAACACAACATCAGAGAATCCATACTGGAGAAAAGCCCTATAAATGTAACCAGTGTGGGAAGGCCTTTAGTTTGAGGTCCTATCTTATTATTCATCAGAGAATTCATAGTGGTGAGAAAGCATATGAATGTAGTGAATGTGGGAAAGCTTTCAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186812-10-5,11-5,12-5,13-5-2/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.188 A=NA C2=0.199
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=7.4),PF0009621=zf-C2H2=WD(100=6.6)
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGGAAACCATGCCTTTCC
R:
TGAAGGTTCCTGAGGGAGTCC
Band lengths:
105-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains