HsaINT1047448 @ hg38
Intron Retention
Gene
ENSG00000186812 | ZNF397
Description
zinc finger protein 397 [Source:HGNC Symbol;Acc:HGNC:18818]
Coordinates
chr18:35243152-35249803:+
Coord C1 exon
chr18:35243152-35243293
Coord A exon
chr18:35243294-35245261
Coord C2 exon
chr18:35245262-35249803
Length
1968 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGG
5' ss Score
6.13
3' ss Seq
TTTGCTACTTATTGTTTCAGATT
3' ss Score
9.03
Exon sequences
Seq C1 exon
GTCCCAGCTAGTCCACAGGGACCAGCAGTGCCATGGAAGGATTTAACATGTCTCAGAGCATCCCAAGAGTCAACAGACATCCACCTCCAGCCCTTAAAGACACAGCTGAAATCCTGGAAACCATGCCTTTCCCCTAAAAGTG
Seq A exon
GTGAGGAATGGGAAATCATCTGGAAACTCTTGACACTTAGGCCTCTGTTTTTGAGAATGCAGAATTAATTGCACTTGACAAACTTGCCACATGTGAGCATCACCTTTATTATTCTAAACCAGAGGTGCTCGCTTTAGCGGCTTTGTATTCACCCCTCATGAATTGCTGTCAGCCCTCCTGTGTGAGTTTCCCTGTTATTCATTCATTCATTTCATTATGTTGTAACTTTATAAAGCGTCAATACATGTCTGGTACTGTGGTAGGCCCCAGGAGAGGTTTCAGGTCTAGGTGGGTGATGGACAAATAAAAAGGCAGTTGCAATGTAGTAAATTATAGAATATAAGTAGGCAGTGGGTACTGTTGGAGCACATCTAAAGGCACCTAACCCAATCTTAGAGGATCAAGGAACACTTCCTGAAGGAAGAAAATCTAAGCTAAGACTTGAACTATGAGTAAGAGAAAGCCAGGTAAATAGGTGGGAGGAGGAGTAGCCCAAGTAAAGGCCATACCATCCCGAAGGTGTGAGAATATAACCCATTCTGAAAATTGCAGGTAGTTTAATTTGACTTGAATGGAGAATTGACAGGTGGTAAGAGAAGAACCAGAGAGGAAAATAGGATCCAAGTCATGAAGACCTGTATGTCATGTTAATTTGTTTGTATAGTTTCTTAAGTGCAGTGGGATGCAGTTGAAGGATTTTGGACAAGGAGTGACATAGTTTGATTTGCAGTTTAGAAGTTAGCTGCAAATGGAGAATCATGTAAGGAAGGCAAGAGTATAGTCCTATTAAAGACTGCTGTAATCCAAGTGGCCACAGTGTATTCAATCAATATGTGTTATGGTAAGCGGTGGAGAACATAAAAGCTGACTCCTGTTCAACAGCATTTAAGTTGTTTTGCAACATCTGGTAATTATTAAAACTAGAGTGTGAGGGAGAGGAGTTGAGGATGATACTGAGGTTTCAGTCTTCAACAGTCTGGTTAATGGTAGTACTGTTCATGTGAATGAGAAAACATAAGGAAAAACAGATACATCTGATGATGTGTTTAGGTTGGTACATTTGGTGCTTGTGAAATATTCAAAAGTAAAATGCCCAATTAGCATAAGACTCTAGAGCTTAATAAAATATGGATATAATTGGGGATCTGGGCAGACATTAGTCAGACAATAGCTTACAATGTAAGATGTAATGGAAGCCAAGGGTAGAGAGTTTGTAGAGTAAGGATACATGAGAGCCCAAAACAGAATCTGGAGGAACGCTCGTGTTTGAGTGATTTACCCTAGAATCTAAGAAGGAACAGCCACAGAAATCAGGCTAATATCACTGGAAGAGAATGTCTCTAGAAGGAAGGTGTGATCCTCAGTGTCAATGCTACAGAGAGGCTAAGTAATAATCTAGAAAGTACTTAGTGGATTAAAGAGCTATGAAGTGATCTTGATGAGAGTAGTATCAGTGGAAGTAGGGGACGGGGCGGTGGGGGGCGGGGGAGGACAGTAAGGCAGAAACCAGATTGTGGAATGAGGATACTTTCACTTGAAAGGCTGCAGACAACTCTTTCAAGAAATCACTATGAGAGAGTGAGGTTGCGAAACCACTTGAGAGAGAGTGAGGTTGCTTGAGGGAGATATGTAGGCAAGAAGGTTGATTTTAAAAGGTGAGAGACACTTAAGCTTATTTAAAAGCTGATGAACAGGAATCAGTTGAGAAAGAGATTGTAAATAGTAGAAAAAAATTGTAGGTAATTTATCAGTTGATGTCTCAAAAGAGGCAGGAAAGGATGGAATTCGAAGTGTAGATGTAGACTTTATTATTAGATAAGAGAGACCCTCTTTTGGCCAGTTGAAAAAAAAGATACTGGAGGACAGTGACATCTTTGTAGGTAGAAGCTTCTGTTTTCTCTCATGTAGAAAGTTTTGACGGTGACAAGAGAAATGTAATATCTGTTTTTTTGCTACTTATTGTTTCAG
Seq C2 exon
ATTGTGAGAACAGTGAAACAGCAACAAAAGAGGGCATCTCAGAAGAAAAATCACAGGGACTCCCTCAGGAACCTTCATTTCGAGGAATTAGTGAGCATGAAAGCAATTTAGTGTGGAAGCAAGGAAGTGCTACAGGGGAGAAACTAAGATCTCCTTCCCAAGGGGGCAGTTTTAGTCAAGTGATCTTCACAAACAAATCTCTAGGAAAGAGAGACCTTTATGATGAGGCTGAAAGATGCTTGATTCTAACTACAGACTCTATAATGTGTCAGAAAGTTCCTCCAGAAGAGAGACCTTATAGATGTGATGTATGTGGGCACAGCTTCAAGCAGCATTCCTCTCTAACACAACATCAGAGAATCCATACTGGAGAAAAGCCCTATAAATGTAACCAGTGTGGGAAGGCCTTTAGTTTGAGGTCCTATCTTATTATTCATCAGAGAATTCATAGTGGTGAGAAAGCATATGAATGTAGTGAATGTGGGAAAGCTTTCAATCAGAGCTCAGCCCTCATTAGACATCGGAAAATCCATACTGGTGAGAAAGCTTGTAAATGTAATGAGTGTGGCAAAGCATTCAGTCAAAGTTCATATCTCATTATACATCAAAGAATTCACACTGGTGAGAAACCTTATGAGTGTAATGAATGTGGGAAAACCTTTAGCCAGAGCTCAAAACTCATTAGACATCAGCGAATTCACACAGGAGAGAGACCCTATGAATGTAATGAATGTGGAAAAGCTTTCAGGCAGAGCTCAGAGCTGATTACTCATCAGAGAATACATAGTGGAGAGAAACCCTATGAATGTAGTGAATGTGGAAAAGCTTTCAGTTTGAGCTCAAACCTTATCAGACATCAGAGAATTCATAGTGGGGAGGAACCTTATCAGTGTAATGAATGTGGCAAAACTTTCAAAAGGAGCTCAGCCCTTGTTCAGCATCAGAGAATTCATTCTGGGGATGAAGCTTATATATGTAATGAATGTGGGAAGGCTTTCAGGCACAGATCGGTCCTTATGCGCCATCAAAGAGTCCACACTATAAAGTAATTTGTGAATACTGTGAATAGTGTAAATACTTCAGTCAGATTTTTAAGTTTGTTAGTCAAAAGAGTTTACTTTGGAGCAAAACTCCATAAAGGTTATAAAATACTAGGTCTTGAGTCTAGCTTGCTTTGTGCAGCATTTCCCAGTGCTAATGTAAAGTGTCCCTTGAAAGCTTTTCCTGTGACTAATCAGAACAGAATACAGAAGAATCATTACTTCCAGCTCTTCTCTTATTAGGAATACTCAGGAAATACGAAAAGTGGGAATGTAACATTGAAACCTCATTTTGTATGAAAGTGTCATGAATATAGCAACCCAGGCTCTGTCACTGCATCTGATTGTTAGTGTGCCAGGTTATGGGGCTGGTGTGGACTGTGTGAGGCACTTCGTCTCAGGAACTAAAAAAAAAAAAAAAACTGACCCAATAAAGAACAGTGACAGAGCAGCAGGAAAGGTGGGGAAATGGCTTCATCAATGATTTGTTGAGCCCAGGGCAGGCCAGGAATTAGATAGGCATGAGAAGAAAGAATATAATTTACCCAAAGGTTATTTTTTGAGTACCTACTTTGTCCCAGGAACTAGGAATACAGTGGAAAACAAGACTGTAGTCTCTACAGTCTAATGGGCAAGGCAGCCAGACAGGCAGTGAAAGTGGAATGCTCCTATGTGACCTTAAGGAGCACCTGACTCAGCCTTGGATAAGGAAATGGGGGAAATGGCCTGAAGGATGAGGAGGAGTTAGCCAAGGTGGTACTCTAGGGAAGTGGTACCCCAGTAAAGAACAGTAGCCAAAGGCCAGAAACAAAGTGTGGAGCATTCCTTGAGTTCCTGTTGTAGTGAGGTCTTGTCTGTCAGAGAAGTCTGGGTCTGGCCAGACTCTTAAGCAGTGCCAATGGAGAAGTTCCTGTTAATAGACAAAACCTGGAGCCCTTGGGCCACAGGGTAGTCAAGAGCTTTGTCTTGGTTTATGTGACCCCAGGGAAAGGGCAAATATGTGGTTTCCTTGCCCAACCTGTAGGCTATCCTAGAACTTCCATGAGGGTGGTGGTGGGAATGAGGGTGAGAAAGAGCCCAGCCTATACCTCAAGAGTCTGCTAGAGTGTTAAGACTCTATTCTCCTTTGATTCTAAAGACAATATCAGAGCTGCTGTCAGGTTTCTTAAAATTCCCAACGCTCTGGATCAGAAGCTGCCATATCATTTGTTTCTGGGGCTATACGCCCACAATTCCTAGTACATTCCCTTGGGCTTTGGTGCTCAAAAAATATTTGTCAGTTGCTGGGTCTGTGACATTCTTTGGGCACCTCGCACATGTTCAGTTTTGTCTTATGTCACCAGTATTTCACAATATCTTTTGCAATTTTTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTTCGCTCTTGTCCAGGCTGGAGTGCAATGGCACGATCTTGGCTCACCGCAAACTCTGCCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTTCTGAGTAGCTGGGATTACAGGCATGCACCACCACAGCTGGCTAATTTTGTATTTTTAGGAAAGACAGGGTTTCTCCATGTTGGTCAGGCTGGTCTCGAATTCTCGATCTCAGGTGATCCGCCCGCCTCGGCCCCCCAAAGTGCTGGGATTACAGGCGTGAGCCATGGCGCCCAACCATCTTTTGCAAATTTTATTAAAGACAATGCTAAAAGGAAGTGACAACTGAAACTAATGGTCACAGTCAGTCAAGACTTCCCTTTTCTGAGGGGCCTAGCAGGAAGAGAATATTTAGACTGATGCTTAGTGTAAGAAGGAATGTTGTACAGGTTAACCAGCAACACAAAGACATATTCAAAAGACCTAATAGGTCAGAAGAATAACATACCACACCAAAAACAAATCTGTATGGAAATCTAGAATCATGTGCATAGAAAAAGAATTTTCATGAGGATAAAAAGAAGCAAAGAGAAGTAATGCTCTTATTGGGGCGTGCATCAGTGGACATGTGCTAACCAGTAAGAACAGCAGGAGGCCTAAATGCCCATGTTTAGGGAGAGAATATGGAAAAAATGGATGGGATTATTTGGAAAAGATGTAAGAGATTAAAATACGTGGTAAGAGCTACTCAACTCTTGTTTTTCTCCTTTTCCATAGATAAAGACCTGAACAAACTGAAAAGGTAGGACGTAAAGTAGGAATTGTAAAACGGAAATACTCTTTATATAAGAAAGCTCTACTGTATGTCAGAAAGCAATGTAATAGATAGACCAAGCACAGTGGCTCACACCTATAATGCCAGCACTTTGGGAGGCCAAGGCTGGAGGATTGCTTGAGTCTAGGAGTTCAAGCCGAGCCTGGGCAGCATAGTGAGACCCCATCTCTACAAAAAATAAACAGAATTTGCCAGACGTGGTAGTGCATGCCTGTAGACCCAAGTATTTGGGAGGCTGAGGTGAGAGGTTCGCTTGAGCCCTGGAAGTCGAGGCTTCAGTGAGGCAAGATCACACCACTGCACTCCAGCCTGGGAGAGCAAGACCCTGTCTCCAAACCAAAAAAAAAGGAAAAAAGTAAATGTAATAGATACTTGCTAAGGGCTTTGTATATACTTATTATTGTTATTTCTCAGCACGTATGTAGCAGATGAGGAAATGAAGGCTAAAGGTCATATATCTACAAAGTGGGGAGGTCAGACTTTGAACCCACAACCTGACTGTGGAGCCACTTCAGTATACTCTCTCCCCATAAGAAAGTTCCAATAGAAAAAAAATGCTACTTAAGTAGGGAAATCACAAAATAAGTGCCAATGAACAATAAATGTTCAACCTCACTACAGTTAAAATGTATATTAAAGCAAGAGTTGAGATGACACTTTTCCTTATAAAACAGACAGGGATTCAGGGACATTGGGACTCTAATGCTGCTGGTAAGACATGAATAAATACATACCATCTCTGGCAATCAATACCAGAAGCTTTAAGCATTGCCTTTTGACTTTGAAATTGTACCTGGAAATGTATGTTTCAGTAACCATCATGAATGTACACAAAATCCTGAAACTCTTAAAACTGATGTCACAGGCCAGGCACAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCACCTGAGATCAGGAGTTCGAGACCAGCCTGACCAATATGGTGAAACCCCGTCTCTACTAAAAATACAAAACAATTAGCTGGTGTGGTGGCATGTGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGACAGGAGAATTGCATGAACCCGGGAGGTGGAGGTTGCAGTGAGCCGAGATTGTACCACTGTATTCCAGCCTGGGTGACAGAGTGAGACTGTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAACACTGATGTCAATTAATATTAAATGAAGTATTCATGATATATTGTTAAGTAAAAATATTACAAAACAATATGTACAGTATGATCCTATGTAAAATATATATTTATGTATTAAAAATACTGAAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186812:ENST00000330501:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.168 A=NA C2=0.199
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=7.4),PF0009621=zf-C2H2=WD(100=6.6)
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGGAAACCATGCCTTTCC
R:
GCTGTGCCCACATACATCACA
Band lengths:
354-2322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains