RnoINT0168178 @ rn6
Intron Retention
Gene
ENSRNOG00000048101 | Zfp397
Description
zinc finger protein 397 [Source:RGD Symbol;Acc:6504280]
Coordinates
chr18:15859112-15863053:+
Coord C1 exon
chr18:15859112-15859253
Coord A exon
chr18:15859254-15861828
Coord C2 exon
chr18:15861829-15863053
Length
2575 bp
Sequences
Splice sites
5' ss Seq
ATGGTAGGA
5' ss Score
6.66
3' ss Seq
ATTTTGCTTTACCATTTCAGATT
3' ss Score
9.35
Exon sequences
Seq C1 exon
GTCCCAGATAATCCACAAGGACCATCAGTGTCATGGAAAGATTTGACATATCTCAGAACATCCCAAGATTCAACAAGCATCCAAGTCCGGCCTCTGAAGACACAGCTGAAATCCTGGAAACCTTGTCTTTCCTCTAAAAATG
Seq A exon
GTAGGAATAGAAACTTATTTTCAGATTTATGGAAGTTAGGCCTCTGGTTTTGTAGATGCAGACTTGCATTTATAAACTTATTCCACATGAACACTTGTATTAATCAAAACCAGAGGTGCTCACTTGAGTGGCTTTGTATTCAACGACCCTCACAGGAATTGCAGTCATCCTTCCTTGTGTGAGTTTCCCTGTCATTGATTCATTTAACCATTTTATAACTTTGCAAAGTGCTAAATTGTCTAATACTATGGTAGACACCATGTTTTCATCTTCAAGTAATTTTCAGACCTTCATTAGTGGTTCATAGAAAAGCAGAAGCATCCGAGGCGGTCTAATGGGTGCCATGGCAGCACAAAGTGACACCAAGCTCAATATGAGAATCAAGAAGGGTTGGAAAGTTGGCTTAGTGGTTAAGAGCATTTGTAGCCCTTGCAGTGGACCTGGGTTCAATTCTTAGCACTCAAATGGCGGCTTGCAACTATCTGTGACTCCAGATCTGACACCATTTATTGACCACCTCCACTACCACGTATGCACACAACCCATAACATACATGCATGCAAAACACCTGTACACATGAAAGAGTCTAAAAATAAATAAATAAATGAATAAAATTTAAAGAAATACTCAAGGAATACTTCCTGGAGGAAGAAATACCTAAGCTATAATTTGAATTATGAGCAGGAGAAAGTCAGGTAAATAGGTAGTACAGAGCCAGTAAAGTGAGAATACAACCTATTACAGACATTTAGGTACTTCAGTTTGACTTGGAAACTGATAAGGAATAATGAAAGAGAAACTAAAGGAGGAAATGAGGTCCAAGTTGTTAAAGCCTTTCACTCTATTCATTTCATACCTGTGAGGAAGTGGCATTATTGGATTTGTTGCTTAGAACTCAGCTTCAGAGTACAGAAATGATTTGAGACTGGAGGTTTATTAAGAGACTTGGAATCCCAGAGGCCACAGTAAATGAGGAAACCTGTGTTACTCTGGGGCATAAAAAAGACTGAAGCTGAAATCTGTTCCTCAGCATTCAAAGTGCACTGTAGTAGGAGGTCGTCATCAAAAGCAAATCATGAAAGAGAAACAACTTGATTAATAATGGTATTGTTAAGGAAAAGAAAAAAATCTGATGTTTGATTATGGGGCATTTGAGTCCAAATACAAGCAAAAATCCAGTATGACAGTCAAGAGTTTAAAGTAGACTTGGAGATCTAAGAAGACGTGATTGTAGTAATTGACATCTAGGGTAATTTCCACAGTGAGGATACATTAAAACACAGAACAGATGCTGAGGGAACATAGTTTTTGAGTTACACGCTCCAAAATAGAAAGGAAAGTCTGGGAAGTGGGAGGGTACCCAGAGGAGAGTCATGTGTAGTGTCTCACGTTTTTAATTCTACCTTTCGTGACTGCAGGATTGCCCTAAGTTTGAGGACAGTCTGGACTGCAGAGTAAAACCCTGTCTCAAGAAGAAAAATAGAACAGTGGAAGGTGTGGGTCTCCGTGTCATGCTATAGAAAGGCTAAGATCCAAAAAGTACCCATTCAATTACGTACAGTTATAAAATCAGTGACCTTGACAAGATTCCTATCAATAGAAGTAGCAGAGTTCAAGAAGGTAAACTAGAAACCAGGCTGCAGACTTTAGACAAACCCATTAGAGAAATTTAATTGTGAATGTAAATGAGGCTACTTAACAGATACATAAGCAAGGAGCTTGGTTTTTAAGAAAGGAGGGGTGATTTCAGCTTAAGCTGTTAAGTAGGATTATCTTAGATTTGTTTTGGGTTTCTGATAAAATACCAAGGCAAAAGCAATTTAGAGGTGAAACAGTTTAAGTTCATGATTCCAAATTCTATTTCATCATTAAAGGACAGTCAGGACAGTGAGAACTTGAAGCAACTAGTCACATCCACAGTAAAGAGCAGGGAAAGTATGACTACATCATCACAGTAAAGAGCAGGGAAAGTATGACTACATCATGCCTACCGCTAGACTTACTTCTTCCACATCATCACAGTTTAGGACCTATATCCAAAAACTATCTAGTCAACAATGGACTGGGTCCTTTCACATCAGTTAACATAATCAGGACATCTCCAGCCCTTCTTCCCCCAAGACATCCACACAAGCAGACCTGATCTAGTCTGAGACATTCTTCCTAGCTGATGTCAGGTTGATAATTAAACACTAACCATTACAGGAAAGAGATTGAAAATAATAATAGTGATCAGTTGAAGTCTTAAAGGGAAGAAAAGATGAGTCAAAAGGAAGGTGTAGACTTTAGCATTGGGAAAGAGAAAAGATCCCAAGGGACAATGTCATCTTTGTAAATAGACCCTTCTATTTCCTCTTATAGAAAAGGAGACTAAGCTAGCCATAGTGGAGAGGAGTTATAGTCCCAACTACTTGGAAAGCTGGGTAGAAGAATCCCTTGAAACCAGAAGTCTCAGGCTAACCTGTGGAACATAGCAAAATCCTTTCTTATTTTTTTTAAAGACAATGACTTCAGAATAACTGAAGAAATGTAAACTCTAGGATTTTATTAATTTTATTTTGCTTTACCATTTCAG
Seq C2 exon
ATTCTAAGAATAATGAAACAACAGCAAAAGAGGACATTTCAGAAGAAAAAGCACCAGAATTCTCTTGGGATCCTTCATTTAGAGGTGTCAGCGAGCACAAAAGCAATTTAGAATGGCAGCAAAGAAGTTCCCCTCTCCACAGGGGCAGCTTTAGTCAAGTGATCTTCACACACAAATCCTTAGCAAAGAGAGACCATCATGATGAGTCTCAAAGATGCTTGATTCTAAGTACAAACTCTGTTACATGTCAGAAAGTTTCTACAGATGACAGACCTTATAGATGTGACGTATGTGGGCATAGCTTTAAACAACATTTCTCTCTAACACAACATCAGAGAATACACACTGGAGAAAAGCCCTATAAATGTAATCAGTGTGGGAAGGCCTTTAGTTTGAGGTCATATCTTATTATTCATCAGAAAATCCATAGTGGTGAAAAAGCATATGAGTGCAATGAATGTGGAAAGGCCTTCAATCAGAGCTCAGCTCTCACTAGACATCGGAAAATTCATACAGGTGAGAAAGCTTGTAAATGTAATGAGTGTGGAAAAGCATTCAGTCAAAGTTCTTATTTAATCATACATCAAAGAATCCACACTGGTGAGAAACCCTACAGGTGTAATGAATGTGGGAAAACCTTTAGCCAGAGTTCAAAGCTTATTAGACACCAGCGGATTCATACGGGAGAGAGACCATATGAATGTAATGAATGTGGCAAAGCTTTCAAGCAGAGCTCAGAGCTGATTACCCATCAGAGGATACACAGTGGAGAGAAACCTTACGAATGTAACGAGTGTGGAAAAGCCTTCAGTCTGAACTCAAACCTCATAAGACATCAGAGAATCCACAGTGGAGAGGAGCCTTATCAGTGTAATGACTGTGGCAAAACCTTCAAAAGGAGCTCAGCCCTTGTTCAGCACCAGAGAATCCACTCTGGAGATGAAGCTTATATATGTAATGAGTGTGGGAAGGCTTTTAGGCACAGGTCAGTGTTGATGCGCCATCAGAGAGTCCACGATATTAAGTAACTTAATACAATGATTTGTAAATACATCCGTATATTTTTCTCTATTAGTCATAAGGTTGATTTTGGAGCAAGATTCCATAAAGGTAGTTTAAAAAAAAAAGTTTTTAGTTAGTCTAACTTGCTTTGTGCAGCACTTCCCCAGTGCTAATGAAAAAGATACAAGACCATCACTTTAAGCTTTGTAACATTAGGAATACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048101:ENSRNOT00000071548:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.354 A=NA C2=0.123
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.6),PF134651=zf-H2C2_2=WD(100=7.6),PF134651=zf-H2C2_2=WD(100=7.6),PF134651=zf-H2C2_2=WD(100=7.6),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.6),PF0009621=zf-C2H2=WD(100=6.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]