MmuALTD1011528-3/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000025409 | Mbd6
Description
methyl-CpG binding domain protein 6 [Source:MGI Symbol;Acc:MGI:106378]
Coordinates
chr10:127282737-127283088:-
Coord C1 exon
chr10:127283029-127283088
Coord A exon
chr10:127283021-127283028
Coord C2 exon
chr10:127282737-127282907
Length
8 bp
Sequences
Splice sites
5' ss Seq
TAAGTGCGG
5' ss Score
-1.1
3' ss Seq
TTTCGACTTCTCTTATACAGGCA
3' ss Score
8.82
Exon sequences
Seq C1 exon
CCCTGCCCGGAACAGCAGCAGCTCCCGCCAGGACGTGACCTTGGAACCCAGCCCTACAAC
Seq A exon
GCGAGTAA
Seq C2 exon
GCAGCTGTCCCTTTGCCTCCCCGGGCCCGCCCTGGACGTCCTGCCAAAAATAAGAGGAGGAAACTGGCCCCATAGCAGCCATACCTGGAGCTGGAATCTGACCCTGACTGGGGAGAGCTGAGTGCTGAGCCTTGGGAGCCCCTGCCAGCCACGTGCACCTGTGGACAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025409-18-30,19-30,20-30-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGGAACCCAGCCCTACAAC
R:
GGGGCCAGTTTCCTCCTCTTA
Band lengths:
92-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types