MmuALTD1012338-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000026131 | Dst
Description
dystonin [Source:MGI Symbol;Acc:MGI:104627]
Coordinates
chr1:34114549-34116195:+
Coord C1 exon
chr1:34114549-34114584
Coord A exon
chr1:34114585-34114641
Coord C2 exon
chr1:34116118-34116195
Length
57 bp
Sequences
Splice sites
5' ss Seq
GGGGTAGGT
5' ss Score
6.59
3' ss Seq
CTTCCATTTTCTGTCCTTAGCCC
3' ss Score
9.83
Exon sequences
Seq C1 exon
CCGAGGGAGCGAGACTTTTTGAAGACCTTACGGTTG
Seq A exon
GTGAGTGCAACAGCAGCATGCGAGTGTGCGCAGCATGAGGAGGATGAGGACAAGGGG
Seq C2 exon
CCCCGGGAGAAGGGTCGGATGCGTTTTCACAGGCTACAGAACGTACAGATTGCACTCGACTATTTGAAAAGACGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026131-34-25,35-25-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(9.7=100)
A:
NA
C2:
PF0030726=CH=FE(24.8=100)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENSMUST00000183034fB1371
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAGGGAGCGAGACTTTTTG
R:
GCGTCTTTTCAAATAGTCGAGTGC
Band lengths:
111-168
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types