RnoALTD0009597-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000012207 | Dst
Description
dystonin [Source:RGD Symbol;Acc:1306566]
Coordinates
chr9:38095697-38097364:-
Coord C1 exon
chr9:38097329-38097364
Coord A exon
chr9:38097266-38097328
Coord C2 exon
chr9:38095697-38095774
Length
63 bp
Sequences
Splice sites
5' ss Seq
GGGGTAGGT
5' ss Score
6.59
3' ss Seq
CTTCCATCTTCTATCCTCAGCCC
3' ss Score
8.68
Exon sequences
Seq C1 exon
CCGAGGGAGCGAGACTTTTTGAAGACCTTACGGTTG
Seq A exon
GTGAGTGCAACAGCAGCATGCGAGTGTGAGCAGCATGAGGAGGTGGAGGATGAGGACAAGGGG
Seq C2 exon
CCCCGAGAGAAGGGTCGGATGCGCTTTCACAGGCTACAGAATGTACAGATTGCACTCGACTATTTGAAAAGACGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012207-11-4,12-4-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(9.7=100)
A:
NA
C2:
PF0030726=CH=FE(22.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAGGGAGCGAGACTTTTTG
R:
GCGTCTTTTCAAATAGTCGAGTGC
Band lengths:
111-174
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]