RnoEX0030042 @ rn6
Exon Skipping
Gene
ENSRNOG00000012207 | Dst
Description
dystonin [Source:RGD Symbol;Acc:1306566]
Coordinates
chr9:38095697-38097979:-
Coord C1 exon
chr9:38097890-38097979
Coord A exon
chr9:38097329-38097364
Coord C2 exon
chr9:38095697-38095774
Length
36 bp
Sequences
Splice sites
3' ss Seq
CTGTCTGTTATATTCATTAGCCG
3' ss Score
3.85
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
GTTCGCAAGCACGTGAACGATCTCTACGAGGATCTGCGGGACGGGCACAATTTGATCTCCCTCCTGGAGGTTCTGTCCGGAGACACCTTG
Seq A exon
CCGAGGGAGCGAGACTTTTTGAAGACCTTACGGTTG
Seq C2 exon
CCCCGAGAGAAGGGTCGGATGCGCTTTCACAGGCTACAGAATGTACAGATTGCACTCGACTATTTGAAAAGACGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012207_CASSETTE6
Average complexity
S*
Mappability confidence:
100%=50=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(25.7=100)
A:
PF0030726=CH=FE(9.7=100)
C2:
PF0030726=CH=FE(22.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTCTACGAGGATCTGCGGG
R:
TTCTGTAGCCTGTGAAAGCGC
Band lengths:
112-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]