MmuEX0015739 @ mm9
Exon Skipping
Gene
ENSMUSG00000026131 | Dst
Description
dystonin [Source:MGI Symbol;Acc:MGI:104627]
Coordinates
chr1:34170778-34173040:+
Coord C1 exon
chr1:34170778-34170867
Coord A exon
chr1:34171394-34171486
Coord C2 exon
chr1:34172963-34173040
Length
93 bp
Sequences
Splice sites
3' ss Seq
CTGTCTGTTATATTCATTAGCCG
3' ss Score
3.85
5' ss Seq
GGGGTAGGT
5' ss Score
6.59
Exon sequences
Seq C1 exon
GTTCGGAAGCACGTGAACGATCTCTACGAGGATCTGAGGGACGGGCACAATTTGATCTCCCTCCTGGAGGTTCTGTCTGGAGACACCTTG
Seq A exon
CCGAGGGAGCGAGACTTTTTGAAGACCTTACGGTTGGTGAGTGCAACAGCAGCATGCGAGTGTGCGCAGCATGAGGAGGATGAGGACAAGGGG
Seq C2 exon
CCCCGGGAGAAGGGTCGGATGCGTTTTCACAGGCTACAGAACGTACAGATTGCACTCGACTATTTGAAAAGACGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026131-'20-15,'20-14,21-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.290 C2=0.033
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(28.7=100)
A:
PF0030726=CH=FE(22.7=100)
C2:
PF0030726=CH=FE(24.8=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCGGAAGCACGTGAACGAT
R:
TGGCGTCTTTTCAAATAGTCGAGT
Band lengths:
167-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: