BtaEX0012092 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021237 | DST
Description
dystonin [Source:HGNC Symbol;Acc:HGNC:1090]
Coordinates
chr23:3431407-3433795:+
Coord C1 exon
chr23:3431407-3431496
Coord A exon
chr23:3432021-3432056
Coord C2 exon
chr23:3433718-3433795
Length
36 bp
Sequences
Splice sites
3' ss Seq
CTGTCTGTTATATTCATTAGCCA
3' ss Score
3.78
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
GTTCGAAAACACGTGAACGATCTCTATGAAGACTTGAGGGACGGACACAATTTGATTTCTCTTTTGGAGGTTCTTTCCGGAGACACCTTG
Seq A exon
CCAAGGGAGCGAGATTTTTTGAAGACCTTACGGTTG
Seq C2 exon
CCCAGAGAGAAGGGTCGGATGCGTTTTCACAGACTCCAGAATGTACAAATTGCACTTGACTATTTGAAAAGACGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021237_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=50=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=PU(33.3=96.7)
A:
PF0030726=CH=FE(11.1=100)
C2:
PF0030726=CH=FE(28.7=100)
Main Inclusion Isoform:
ENSBTAT00000061451fB2282
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAAAACACGTGAACGATCTCT
R:
AAAACGCATCCGACCCTTCTC
Band lengths:
115-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development