DreEX0067014 @ danRer10
Exon Skipping
Gene
ENSDARG00000102406 | si:ch211-165e15.1
Description
si:ch211-165e15.1 [Source:ZFIN;Acc:ZDB-GENE-081028-59]
Coordinates
chr13:1354903-1363194:+
Coord C1 exon
chr13:1354903-1354992
Coord A exon
chr13:1360035-1360070
Coord C2 exon
chr13:1363117-1363194
Length
36 bp
Sequences
Splice sites
3' ss Seq
CTTTGTGCTCCCGCTCTAAGCCA
3' ss Score
6.01
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
GTCCGAAAGCATGTGAATGACCTGTATGAGGATTTGCGGGATGGACATAACCTGATCTCCCTTCTGGAGGTGTTGTCCGGTGAGACTCTG
Seq A exon
CCAAGGGAGCGTGATTTACTGAAGACGTTGCGGTTG
Seq C2 exon
CCGCGGGAGAAGGGCCGCATGCGCTTCCACAGACTCCAGAATGTACAGATCGCACTCGACTACTTAAAAAGACGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102406_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.013
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(28.7=100)
A:
PF0030726=CH=FE(9.7=100)
C2:
PF0030726=CH=FE(24.8=100)
Main Inclusion Isoform:
ENSDART00000159047fB5616
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGTATGAGGATTTGCGGG
R:
ATTCTGGAGTCTGTGGAAGCG
Band lengths:
113-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]