GgaEX1021115 @ galGal4
Exon Skipping
Gene
ENSGALG00000016289 | DST
Description
dystonin [Source:HGNC Symbol;Acc:HGNC:1090]
Coordinates
chr3:86361820-86364825:+
Coord C1 exon
chr3:86361820-86361909
Coord A exon
chr3:86362427-86362462
Coord C2 exon
chr3:86364748-86364825
Length
36 bp
Sequences
Splice sites
3' ss Seq
CTGTCTGTTATATTCATTAGCCA
3' ss Score
3.78
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
GTTCGAAAACATGTGAATGACCTCTATGAAGACCTAAGAGATGGACATAACTTGATCTCACTTTTAGAAGTCCTTTCCGGAGACACCCTG
Seq A exon
CCAAGAGAGCGAGATTTTTTGAAGACCTTACGGTTG
Seq C2 exon
CCCCGAGAAAAAGGTCGGATGCGTTTTCACAGACTCCAGAACGTCCAAATTGCACTTGACTATTTGAAAAAGCGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016289_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(32.6=100)
A:
PF0030726=CH=FE(10.9=100)
C2:
PF0030726=CH=FE(28.1=100)
Main Inclusion Isoform:
ENSGALT00000026264fB6984
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAAAACATGTGAATGACCTCT
R:
TGTGAAAACGCATCCGACCTT
Band lengths:
119-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]