MmuALTD1013325-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000026853 | Crat
Description
carnitine acetyltransferase [Source:MGI Symbol;Acc:MGI:109501]
Coordinates
chr2:30403489-30404581:-
Coord C1 exon
chr2:30404528-30404581
Coord A exon
chr2:30404439-30404527
Coord C2 exon
chr2:30403489-30403626
Length
89 bp
Sequences
Splice sites
5' ss Seq
TCTGTTTTA
5' ss Score
-27.71
3' ss Seq
GACAGATCTCCCACCCACAGGCC
3' ss Score
8.12
Exon sequences
Seq C1 exon
AAGGTGGAGCTGCTCCGGAAGGCTGTGCAGGCCCACCGAGCCTACACTGACCGG
Seq A exon
GTGAGTGAGCCCTGCTCTTGTCCTTAGCCTGCCTGTCTGTCCTGTCCATCCTTCTGTCCATTCCTGCTAAGAACTGCCTCTTCCCATCT
Seq C2 exon
GCCATCCGAGGGGAGGCCTTTGACCGGCACCTGCTGGGTCTGAAGCTGCAGGCCATCGAGGACCTGGTCAGCATGCCTGACATCTTCATGGACACCTCTTACGCCATTGCTATGCACTTCAACCTCTCTACCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026853-35-53,36-53-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0075515=Carn_acyltransf=FE(15.2=100)
A:
NA
C2:
PF0075515=Carn_acyltransf=FE(37.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCACCGAGCCTACACTGA
R:
TGGCTGGTAGAGAGGTTGAAGT
Band lengths:
160-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types