MmuALTD1013325-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000026853 | Crat
Description
carnitine acetyltransferase [Source:MGI Symbol;Acc:MGI:109501]
Coordinates
chr2:30403489-30404581:-
Coord C1 exon
chr2:30404528-30404581
Coord A exon
NA
Coord C2 exon
chr2:30403489-30403626
Length
0 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
GACAGATCTCCCACCCACAGGCC
3' ss Score
8.12
Exon sequences
Seq C1 exon
AAGGTGGAGCTGCTCCGGAAGGCTGTGCAGGCCCACCGAGCCTACACTGACCGG
Seq A exon
NA
Seq C2 exon
GCCATCCGAGGGGAGGCCTTTGACCGGCACCTGCTGGGTCTGAAGCTGCAGGCCATCGAGGACCTGGTCAGCATGCCTGACATCTTCATGGACACCTCTTACGCCATTGCTATGCACTTCAACCTCTCTACCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026853-35-53,36-53-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0075515=Carn_acyltransf=FE(15.2=100)
A:
NA
C2:
PF0075515=Carn_acyltransf=FE(37.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCACCGAGCCTACACTGA
R:
TGGCTGGTAGAGAGGTTGAAGT
Band lengths:
160-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types