RnoALTD0007768-2/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000018145 | Crat
Description
carnitine O-acetyltransferase [Source:RGD Symbol;Acc:1303031]
Coordinates
chr3:8969496-8970474:-
Coord C1 exon
chr3:8970420-8970474
Coord A exon
chr3:8970418-8970419
Coord C2 exon
chr3:8969496-8969633
Length
2 bp
Sequences
Splice sites
5' ss Seq
CGCGTGAGT
5' ss Score
8.4
3' ss Seq
GACAGTTCTCCCACCCACAGGCC
3' ss Score
9.33
Exon sequences
Seq C1 exon
CAGAGGGTGGAGCTGCTTCGAAAGGCTGTGCAGGCCCACCGAGCCTACACCGACC
Seq A exon
GC
Seq C2 exon
GCCATCCGAGGGGAGGCCTTTGACCGGCACTTGCTGGGTCTGAAGCTACAGGCCATCGAGGACCTGGTGAGCATGCCTGACATCTTCATGGATACCTCCTACGCCATTGCCATGCACTTCAACCTTTCTACCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018145-32-42,33-42,34-42-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0075515=Carn_acyltransf=FE(3.4=100)
A:
NA
C2:
PF0075515=Carn_acyltransf=FE(7.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTGCTTCGAAAGGCTGT
R:
TCGATGGCCTGTAGCTTCAGA
Band lengths:
105-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]