MmuALTD1013494-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000026958 | Dpp7
Description
dipeptidylpeptidase 7 [Source:MGI Symbol;Acc:MGI:1933213]
Coordinates
chr2:25352276-25352711:-
Coord C1 exon
chr2:25352686-25352711
Coord A exon
NA
Coord C2 exon
chr2:25352276-25352566
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
CTTATCTGTCTGCTTCTTAGAGC
3' ss Score
8.54
Exon sequences
Seq C1 exon
GGGGGAGCACATCACCTAGATCTCAG
Seq A exon
NA
Seq C2 exon
AGCATCTAACTCAGAAGACCCCCCATCTGTCGTGGAGGTGCGTAAGCTGGAATCTACCCTCATTCGTGAGTGGGTAGCAGCAGCCAGACTAAAGCAACCAGCAATGCCACGGTGGCCTGGGCCTAAGAAGCAGCACCCTTCCAGATAAGATGCAGCAAACCCCAGACATCCCTTGTTTTATGTGATCTACAGTGGTGTGACAACTTGCCTTGTATCTGATGGACTGTCCAGATTTATGGTAGATGGAAGAAACTGAATAAACACATGTTAATGTGTCCTTGTCTAGTAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026958-21-23,22-23-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=NA C2=0.469
Domain overlap (PFAM):
C1:
PF055777=Peptidase_S28=FE(5.4=100)
A:
NA
C2:
PF055777=Peptidase_S28=PD(4.0=34.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGCACATCACCTAGATCTCA
R:
GCTGCTACCCACTCACGAATG
Band lengths:
105-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types