RnoALTD0009494-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000012640 | Dpp7
Description
dipeptidylpeptidase 7 [Source:RGD Symbol;Acc:71073]
Coordinates
chr3:2569135-2569624:-
Coord C1 exon
chr3:2569554-2569624
Coord A exon
NA
Coord C2 exon
chr3:2569135-2569434
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCAG
5' ss Score
4.95
3' ss Seq
CTTATCTGTCTGCTTCTTAGAGC
3' ss Score
8.54
Exon sequences
Seq C1 exon
ATCCAGCGCAACCTGAGTACATCAATCATTGCTGTCACCATCCAAGGGGGAGCACATCACCTAGACCTCAG
Seq A exon
NA
Seq C2 exon
AGCATCTAACTCAGAAGACCCCCCGTCTGTCGTGGAGGTGCGTAAGCTGGAAGCTACCCTCATTCGCGAGTGGGTAGCAGCAGCCAGACTAAAGCAACCAGCAGAGGCACAGTGGCCTGGGCCTAAGTAGCAGCCTTCCAGCCGAGATGCAGCAAACCCAGAGACCCTGTTCTATGTGAGCCGCTGTGTGACAGCTCGCCTTACGTCTGATACTATCCAGACTCATGGTGCTTTGTCTGAGCTGGACCTCAGCAAGGAGCTGGTGGGAGATGGAGAGACAGAATAAACACGTGCTATGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012640-18-30,19-30-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=NA C2=0.256
Domain overlap (PFAM):
C1:
PF055777=Peptidase_S28=FE(5.4=100)
A:
NA
C2:
PF055777=Peptidase_S28=PD(4.0=38.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGCACATCACCTAGACCT
R:
CTCGCGAATGAGGGTAGCTTC
Band lengths:
94-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]