RnoALTA0012672-3/4 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000012640 | Dpp7
Description
dipeptidylpeptidase 7 [Source:RGD Symbol;Acc:71073]
Coordinates
chr3:2569230-2569624:-
Coord C1 exon
chr3:2569554-2569624
Coord A exon
chr3:2569331-2569432
Coord C2 exon
chr3:2569230-2569330
Length
102 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCAG
5' ss Score
4.95
3' ss Seq
TATCTGTCTGCTTCTTAGAGCAT
3' ss Score
0.55
Exon sequences
Seq C1 exon
ATCCAGCGCAACCTGAGTACATCAATCATTGCTGTCACCATCCAAGGGGGAGCACATCACCTAGACCTCAG
Seq A exon
CATCTAACTCAGAAGACCCCCCGTCTGTCGTGGAGGTGCGTAAGCTGGAAGCTACCCTCATTCGCGAGTGGGTAGCAGCAGCCAGACTAAAGCAACCAGCAG
Seq C2 exon
AGGCACAGTGGCCTGGGCCTAAGTAGCAGCCTTCCAGCCGAGATGCAGCAAACCCAGAGACCCTGTTCTATGTGAGCCGCTGTGTGACAGCTCGCCTTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012640-18-33,18-32,18-31,18-30-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=NA C2=0.256
Domain overlap (PFAM):
C1:
PF055777=Peptidase_S28=FE(5.4=100)
A:
NA
C2:
PF055777=Peptidase_S28=PD(4.0=38.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCGCAACCTGAGTACATC
R:
CGTAAGGCGAGCTGTCACAC
Band lengths:
170-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]