MmuALTD1016719-4/7 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000029580 | Actb
Description
actin, beta [Source:MGI Symbol;Acc:MGI:87904]
Coordinates
chr5:142905237-142905449:-
Coord C1 exon
chr5:142905429-142905449
Coord A exon
chr5:142905343-142905428
Coord C2 exon
chr5:142905237-142905278
Length
86 bp
Sequences
Splice sites
5' ss Seq
CTGGCACCA
5' ss Score
-5.03
3' ss Seq
ACCCTGTGCTGCTCACCGAGGCC
3' ss Score
-4.92
Exon sequences
Seq C1 exon
GACTCCTATGTGGGTGACGAG
Seq A exon
GCCCAGAGCAAGAGAGGTATCCTGACCCTGAAGTACCCCATTGAACATGGCATTGTTACCAACTGGGACGACATGGAGAAGATCTG
Seq C2 exon
GCCCCCCTGAACCCTAAGGCCAACCGTGAAAAGATGACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029580-10-12,11-12,12-12,13-12,14-12,15-12,16-12-4/7
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.375 A=NA C2=0.218
Domain overlap (PFAM):
C1:
PF0002214=Actin=PU(8.8=31.2)
A:
NA
C2:
PF0002214=Actin=FE(21.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTCCTATGTGGGTGACGAG
R:
CTGGGTCATCTTTTCACGGTTG
Band lengths:
63-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types