RnoALTD0001713-1/5 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000034254 | Actb
Description
actin, beta [Source:RGD Symbol;Acc:628837]
Coordinates
chr12:13717200-13718812:+
Coord C1 exon
chr12:13717200-13717204
Coord A exon
NA
Coord C2 exon
chr12:13718612-13718812
Length
0 bp
Sequences
Splice sites
5' ss Seq
TTGGCACCA
5' ss Score
-7.93
3' ss Seq
CACTGTCTTGCTTTCTTCAGATC
3' ss Score
10.68
Exon sequences
Seq C1 exon
ATTTG
Seq A exon
NA
Seq C2 exon
ATCATTGCTCCTCCTGAGCGCAAGTACTCTGTGTGGATTGGTGGCTCTATCCTGGCCTCACTGTCCACCTTCCAGCAGATGTGGATCAGCAAGCAGGAGTACGATGAGTCCGGCCCCTCCATCGTGCACCGCAAATGCTTCTAGGCGGACTGTTACTGAGCTGCGTTTTACACCCTTTCTTTGACAAAACCTAACTTGCGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034254-12-15,13-15,16-15,17-15,19-15-1/5
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0002214=Actin=PD(12.3=95.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]