Special

MmuALTD1017350-2/3 @ mm10

Alternative 5'ss

Gene
Description
C-type lectin domain family 2, member d [Source:MGI Symbol;Acc:MGI:2135589]
Coordinates
chr6:129180643-129183217:+
Coord C1 exon
chr6:129180643-129180743
Coord A exon
chr6:129180744-129180747
Coord C2 exon
chr6:129183092-129183217
Length
4 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
TCTCATATTTATATTTTCAGGTA
3' ss Score
9.86
Exon sequences
Seq C1 exon
TCAATCCTGTAGTGGAAACTCAGCTCCTCAGCTCTGAGATGTGTGTCACAAAGGCTTCCCTACCTATGCTTAGTCCCACAGGCAGCCCGCAGGAGGTAGAA
Seq A exon
GTGG
Seq C2 exon
GTAAAATTCTCCAAGGAAAAAGGCACGGAACCATCTCCCCTGAGTCTTGTGCTAAGCTTTACTGCTACTATGGAGTGATCATGGTCCTCACTGTAGCTGTAATTGCTCTTTCTGTTGCTTTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030157-0-0,1-0,2-0-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact

Protein isoform when splice site is used (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):

C1:
NO
A:
NA
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTGTCACAAAGGCTTCCC
R:
GGAGATGGTTCCGTGCCTTTT
Band lengths:
100-104
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types