MmuALTD1017350-3/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000030157 | Clec2d
Description
C-type lectin domain family 2, member d [Source:MGI Symbol;Acc:MGI:2135589]
Coordinates
chr6:129180643-129183217:+
Coord C1 exon
chr6:129180643-129180743
Coord A exon
chr6:129180744-129181072
Coord C2 exon
chr6:129183092-129183217
Length
329 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
TCTCATATTTATATTTTCAGGTA
3' ss Score
9.86
Exon sequences
Seq C1 exon
TCAATCCTGTAGTGGAAACTCAGCTCCTCAGCTCTGAGATGTGTGTCACAAAGGCTTCCCTACCTATGCTTAGTCCCACAGGCAGCCCGCAGGAGGTAGAA
Seq A exon
GTGGGTAAGTATTCAATAGTATTTGAACCAATGGGAGGGGCAGAGAGGAGTTTCAAACAGGGCAGGAAGGCAAAAGAGTTGAACCTTGAACAAAAGATTAAGAACAGAAGGGCGTCTGTGAGCCCGTCACTGTGGGTCTGCAGAGCAGGAGAATGCAGTCGGGATTAGCTATGAGGTTGTTACATTAGTTATTCTATCGGAGCATACAATACTCGAATAGTTCTCAGGCAAGAGAAATGAGCAGCGAGTCACCTTCTAACTGCCAGAGCTGTAGCCACAGCGTTCTCGCTTTGTACTTAGCTTGCTAGTCCACTCTTCCCAGGGATCTG
Seq C2 exon
GTAAAATTCTCCAAGGAAAAAGGCACGGAACCATCTCCCCTGAGTCTTGTGCTAAGCTTTACTGCTACTATGGAGTGATCATGGTCCTCACTGTAGCTGTAATTGCTCTTTCTGTTGCTTTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030157-0-0,1-0,2-0-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTAGTGGAAACTCAGCTCC
R:
CTGACAAAGCAACAGAAAGAGCA
Band lengths:
222-551
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types