MmuALTD1017519-3/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000030287 | Itpr2
Description
inositol 1,4,5-triphosphate receptor 2 [Source:MGI Symbol;Acc:MGI:99418]
Coordinates
chr6:146144109-146147114:-
Coord C1 exon
chr6:146147038-146147114
Coord A exon
chr6:146146555-146147037
Coord C2 exon
chr6:146144109-146144269
Length
483 bp
Sequences
Splice sites
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
3' ss Seq
GTGTTTGCTGTGCTTTGCAGGCC
3' ss Score
10.48
Exon sequences
Seq C1 exon
GTTCTTGCCCTGACTTCCTTCAATGACAGACAATGGTGTGGAAGCCGAATCAACCCTTTCCTCTCCAGATTGCTTTG
Seq A exon
GTCAGTGTTCTATCACAGCAGCAGGGTTACTAAATAGGCCATAAGTGTGTTTGGGGAAGGATTGTGTAAGGACTTTAGAACTTTGTAGTCTACAAAAGCCATTGAGTGTTGAGAGCTCAGTGGGATGTTCTGTAGGAGCTTAGAAGACAAAAATGTTGAACTCAGTGCAGAAGATGGAGGCCTGGCTTGTGATCTTCCAAAGGGGAGTTCAAAGACCATAGTCTGTTTGTTTTTGCGTTAAGATGCTGTGGTTCTGGTTAGCTGGGGCTGAAGCAACAGCTGTGGTTAACAGGGGACAGCACCACACAAGTGAAACCTTTGCTGACAATTGATGCTGGTTAGCTGGAGCTGAGACAATAGCAGTGATTGAGAAGGGACCAGCATCACTCAGGTGAGATCTTCTGGGAAGTGTTTCATGAGAGTCAGCACACAGAAGCTGCGTTTCAGAGATAGCCAAGGGTGTACCTCGTCTTGGCAGCCAAG
Seq C2 exon
GCCTGGAGAGAGACAAGTTTGATAACAAGACAGTGTCCTTTGAGGAGCACATCAAGTCAGAGCACAACATGTGGCATTACCTGTACTTCATCGTCCTGGTGAAGGTGAAGGACCCGACAGAATACACAGGGCCTGAGAGCTACGTGGCTCAGATGATCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030287-104-92,105-92,106-92-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENSMUST00000053273fB11682
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCTTGCCCTGACTTCCTTCA
R:
CGTGATCATCTGAGCCACGTA
Band lengths:
238-721
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types