MmuEX1015458 @ mm10
Exon Skipping
Gene
ENSMUSG00000030287 | Itpr2
Description
inositol 1,4,5-triphosphate receptor 2 [Source:MGI Symbol;Acc:MGI:99418]
Coordinates
chr6:146144109-146157135:-
Coord C1 exon
chr6:146156970-146157135
Coord A exon
chr6:146147038-146147114
Coord C2 exon
chr6:146144109-146144269
Length
77 bp
Sequences
Splice sites
3' ss Seq
CCATCGGGTTCTGCCTCCAGGTT
3' ss Score
9.43
5' ss Seq
TTGGTCAGT
5' ss Score
5.07
Exon sequences
Seq C1 exon
GAGCCCTTGTTTGCTGCCCGGGTAGTCTACGACCTCCTGTTCTTCTTCATCGTCATCATCATCGTTCTCAACCTGATCTTTGGAGTGATCATTGACACGTTTGCTGACCTCAGAAGTGAGAAGCAGAAGAAAGAAGAAATCCTCAAGACAACCTGCTTCATCTGTG
Seq A exon
GTTCTTGCCCTGACTTCCTTCAATGACAGACAATGGTGTGGAAGCCGAATCAACCCTTTCCTCTCCAGATTGCTTTG
Seq C2 exon
GCCTGGAGAGAGACAAGTTTGATAACAAGACAGTGTCCTTTGAGGAGCACATCAAGTCAGAGCACAACATGTGGCATTACCTGTACTTCATCGTCCTGGTGAAGGTGAAGGACCCGACAGAATACACAGGGCCTGAGAGCTACGTGGCTCAGATGATCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030287_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(12.8=51.8)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000053273fB11682
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACACGTTTGCTGACCTCAG
R:
ACCAGGACGATGAAGTACAGGT
Band lengths:
174-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types