MmuALTD1018276-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000030945 | Acsm2
Description
acyl-CoA synthetase medium-chain family member 2 [Source:MGI Symbol;Acc:MGI:2385289]
Coordinates
chr7:119580356-119582786:+
Coord C1 exon
chr7:119580356-119580435
Coord A exon
chr7:119580436-119580590
Coord C2 exon
chr7:119582706-119582786
Length
155 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
CTGTCCTTGTCTCTCCACAGGGA
3' ss Score
13.54
Exon sequences
Seq C1 exon
GTGCTTTCCAGCTATCCCATCAATACCCTGGTGGGTGCCCCCATCATTTACCGGATGTTGCTACAACAGGATCTTTCCAG
Seq A exon
GTGATGGACCTGTAGGGGACTGGTAGGAGTCTCTAGACCCATCCCTGTACTTATTAAGCTGGATGTACTTAGCCTATATAAAACCAGGAACACCATCATAGCACCCAGGACTCAGCCCCAAGTCTGGGTAGACTCCAGTTCCAATGAATCTAAAG
Seq C2 exon
GGACTTATCTGCAGAGTTTCCAGGACAATGAAAGTCAAACCAGGCTACCTGGGAACAGCCTTTGCTCACTATGATGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030945-19-21,20-21-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(6.3=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(29.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGCTATCCCATCAATACCCT
R:
TGTACATCATAGTGAGCAAAGGC
Band lengths:
154-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types