MmuEX6013576 @ mm10
Exon Skipping
Gene
ENSMUSG00000030945 | Acsm2
Description
acyl-CoA synthetase medium-chain family member 2 [Source:MGI Symbol;Acc:MGI:2385289]
Coordinates
chr7:119580356-119582786:+
Coord C1 exon
chr7:119580356-119580435
Coord A exon
chr7:119580613-119580736
Coord C2 exon
chr7:119582706-119582786
Length
124 bp
Sequences
Splice sites
3' ss Seq
AAGTAAACTCTCTTCTTTAGTTA
3' ss Score
4.06
5' ss Seq
ACGGTATCT
5' ss Score
5.42
Exon sequences
Seq C1 exon
GTGCTTTCCAGCTATCCCATCAATACCCTGGTGGGTGCCCCCATCATTTACCGGATGTTGCTACAACAGGATCTTTCCAG
Seq A exon
TTACAAATTTCCACATCTGCATAGCTGCTTCAGTGGAGGAGAGACCCTTCTCCCAGAGACTCTGGAGAACTGGAAAGCCAAGACAGGACTGGAAATCCGAGAAATCTATGGCCAGACAGAAACG
Seq C2 exon
GGACTTATCTGCAGAGTTTCCAGGACAATGAAAGTCAAACCAGGCTACCTGGGAACAGCCTTTGCTCACTATGATGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030945-'19-21,'19-18,21-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(6.3=100)
A:
PF0050123=AMP-binding=FE(9.9=100)
C2:
PF0050123=AMP-binding=FE(29.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGCTATCCCATCAATACCCT
R:
TGTACATCATAGTGAGCAAAGGC
Band lengths:
154-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types