BtaEX6108951 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019423 | ACSM2A
Description
Bos taurus acyl-CoA synthetase medium-chain family member 2A (ACSM2A), mRNA. [Source:RefSeq mRNA;Acc:NM_001101952]
Coordinates
chr25:18295521-18298936:+
Coord C1 exon
chr25:18295521-18295600
Coord A exon
chr25:18295815-18295938
Coord C2 exon
chr25:18298835-18298936
Length
124 bp
Sequences
Splice sites
3' ss Seq
ATTTCTCTTCTCTTCCTCAGTTA
3' ss Score
9.24
5' ss Seq
ACGGTAGGA
5' ss Score
8.6
Exon sequences
Seq C1 exon
GTTCTGTCCAGCTATCCAATTAACTACATGGTAGGCGCACCCATTGTTTACCGGATGTTGCTACTACAGGACCTTTCCAG
Seq A exon
TTACAAGTTCCCACATCTAAAGTGTTGCTTCAGTGGTGGGGAGACCCTCCTTCCAGACACTCTGGAAAAATGGAAGGCCCAAACGGGACTGGACATCCTAGAATTCTATGGCCAGACAGAAACG
Seq C2 exon
GTAATAGATGACAAGGGCAATGTCCTGCCACCTGGCACAGAAGGAGATGTGGGCATTCGAGTCAAACCCATCAGACCTATAGGCATCTTTTCTGGCTATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019423-'8-13,'8-12,9-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.088
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(8.3=100)
A:
PF0050123=AMP-binding=FE(13.0=100)
C2:
PF0050123=AMP-binding=PD(0.6=5.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTCCAGCTATCCAATTAACT
R:
CACATAGCCAGAAAAGATGCCT
Band lengths:
180-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]