RnoEX0006224 @ rn6
Exon Skipping
Gene
ENSRNOG00000042084 | Acsm2
Description
acyl-CoA synthetase medium-chain family member 2 [Source:RGD Symbol;Acc:708383]
Coordinates
chr1:189312453-189321109:+
Coord C1 exon
chr1:189312453-189312532
Coord A exon
chr1:189312709-189312832
Coord C2 exon
chr1:189321008-189321109
Length
124 bp
Sequences
Splice sites
3' ss Seq
AAATGAACTCTCTTCTTTAGTTA
3' ss Score
5.31
5' ss Seq
ACGGTATTT
5' ss Score
5.46
Exon sequences
Seq C1 exon
GTGCTTTCCAGCTACCCCATCAATACCCTGCTGGGTGCCCCCCTCATTTACCGGATGTTGCTACAACAGGATCTTTCCAG
Seq A exon
TTACAAGTTCCCACATCTGCATAGCTGCTTCAGTGGAGGAGAGACCCTCCTCCCGGAGACTCTGGAGAGTTGGAAAGCCAAGACAGGACTGGAAATCCGAGAAATCTATGGCCAGACAGAAACG
Seq C2 exon
GTCATAGATGAGCAGGGCAATGTCCTGCCCCCTGGCAAGGAAGGAGACATGGCTCTCAGGGTGAAGCCCATCAGGCCTATAGGCATGTTCTCTGGATATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042084_MULTIEX1-3/5=2-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.088
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(6.3=100)
A:
PF0050123=AMP-binding=FE(9.9=100)
C2:
PF0050123=AMP-binding=FE(8.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTCCAGCTACCCCATCAA
R:
CACATATCCAGAGAACATGCCT
Band lengths:
180-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]