GgaEX6013245 @ galGal4
Exon Skipping
Gene
ENSGALG00000002200 | ACSM3
Description
acyl-CoA synthetase medium-chain family member 3 [Source:HGNC Symbol;Acc:HGNC:10522]
Coordinates
chr14:14917955-14919467:+
Coord C1 exon
chr14:14917955-14918034
Coord A exon
chr14:14918715-14918838
Coord C2 exon
chr14:14919387-14919467
Length
124 bp
Sequences
Splice sites
3' ss Seq
ATTTGCTTTCTCTTTCCCAGCTG
3' ss Score
10.18
5' ss Seq
ACTGTACGT
5' ss Score
6.33
Exon sequences
Seq C1 exon
AGCCTGTCAAGATATCCCATAACTGTCTTCTGCTCAGCCCCAACTGCTTACCGAATGCTCGTGCAGCACCAGCTGCCCAG
Seq A exon
CTGCACATCCAACAGCCTGCGGCACTGTGTGAGCGCCGGGGAGCCAATCAACCCCGAGGTGATGGCCAAGTGGAAAGCATGGACAGGGCTGGATATCCATGAATGCTACGGACAAACAGAAACT
Seq C2 exon
GTGCTTGTCTGTGGAAATTTTAAAGGAATGGAAATTAAACCTGGCTCTATGGGAAAGCCATCACCAGGGTATGATGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002200-'7-12,'7-10,8-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.037
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(6.2=100)
A:
PF0050123=AMP-binding=FE(9.9=100)
C2:
PF0050123=AMP-binding=FE(6.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGTCAAGATATCCCATAACTGT
R:
ACATCATACCCTGGTGATGGC
Band lengths:
156-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]