MmuEX6013610 @ mm10
Exon Skipping
Gene
ENSMUSG00000030935 | Acsm3
Description
acyl-CoA synthetase medium-chain family member 3 [Source:MGI Symbol;Acc:MGI:99538]
Coordinates
chr7:119775483-119778459:+
Coord C1 exon
chr7:119775483-119775562
Coord A exon
chr7:119777053-119777176
Coord C2 exon
chr7:119778379-119778459
Length
124 bp
Sequences
Splice sites
3' ss Seq
ACTCCCTGTTATTGGAGAAGCTA
3' ss Score
-0.7
5' ss Seq
ACGGTACCT
5' ss Score
6.79
Exon sequences
Seq C1 exon
ACCCTCTCCAAGTTCCCCATCACTGTCTTCTGTTCTGCACCAACTGCCTACCGGATGCTTGTTCAGAATGACATGAGCAG
Seq A exon
CTATAAGTTCAACAGTTTGAAGCACTGTGTCAGTGCTGGAGAACCTATTAACCCTGAAGTGATGGAACAATGGAGAAAGAAGACGGGCCTAGACATCTATGAAGGATATGGACAGACAGAAACG
Seq C2 exon
GTGCTGATCTGTGGAAATTTCAAGGGGATGAAAATTAAGCCCGGCTCAATGGGAAAGCCTTCTCCTGCTTTTGATGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030935-'9-27,'9-19,15-27=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.012 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(6.3=100)
A:
PF0050123=AMP-binding=FE(9.9=100)
C2:
PF0050123=AMP-binding=FE(6.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCTCCAAGTTCCCCATCA
R:
ACATCAAAAGCAGGAGAAGGCT
Band lengths:
156-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types