HsaEX0002099 @ hg38
Exon Skipping
Gene
ENSG00000005187 | ACSM3
Description
acyl-CoA synthetase medium-chain family member 3 [Source:HGNC Symbol;Acc:HGNC:10522]
Coordinates
chr16:20781708-20786158:+
Coord C1 exon
chr16:20781708-20781787
Coord A exon
chr16:20784984-20785107
Coord C2 exon
chr16:20786078-20786158
Length
124 bp
Sequences
Splice sites
3' ss Seq
TTATCTGGTTTTCTGAGAAGCTA
3' ss Score
2.55
5' ss Seq
ACGGTACCT
5' ss Score
6.79
Exon sequences
Seq C1 exon
ACACTCTCCAAGTACCCCATCACAGTCTTCTGTTCAGCACCAACTGTATACCGAATGCTTGTACAGAATGATATAACCAG
Seq A exon
CTATAAGTTTAAAAGCTTAAAGCACTGTGTGAGTGCTGGGGAACCAATTACCCCTGACGTGACTGAAAAATGGAGAAACAAGACGGGCCTGGATATCTACGAAGGATATGGACAGACTGAAACG
Seq C2 exon
GTGCTAATCTGTGGAAATTTTAAGGGAATGAAAATTAAACCTGGCTCAATGGGAAAACCTTCTCCTGCTTTCGATGTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005187-'43-47,'43-45,46-47
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.011 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(12.0=100)
A:
PF0050123=AMP-binding=FE(11.7=100)
C2:
PF0050123=AMP-binding=PD(11.1=67.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTCCAAGTACCCCATCACA
R:
ACATCGAAAGCAGGAGAAGGT
Band lengths:
155-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development