DreEX6028911 @ danRer10
Exon Skipping
Gene
ENSDARG00000004880 | acsm3
Description
acyl-CoA synthetase medium-chain family member 3 [Source:ZFIN;Acc:ZDB-GENE-080220-22]
Coordinates
chr2:44880239-44881696:-
Coord C1 exon
chr2:44881617-44881696
Coord A exon
chr2:44880559-44880682
Coord C2 exon
chr2:44880239-44880319
Length
124 bp
Sequences
Splice sites
3' ss Seq
ATTTTTGTGATTTTTACCAGGTA
3' ss Score
8.99
5' ss Seq
ACTGTAAAT
5' ss Score
0.41
Exon sequences
Seq C1 exon
ACTCTGAGCCACTATCCCATCACCACCTTCTGCACAGCACCGACCGCCTATCGAATGCTTGTACAGGATGACTTGTCTAA
Seq A exon
GTATAAATTCCAGGCTCTTGAACACTGTCTGTGTGCCGGAGAGCCCATTAACCCTGAGGTCATGTGCAAATGGAAAGAGCTCACTGGACTGGACATCTACGAGGGATACGGACAGACTGAGACT
Seq C2 exon
GTTTTAATAGCGGGCACATTCAAAGGCATGAAGATCAAACCAGGATCTTTTGGAAAAGCATCACCAGGATATGACGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004880-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(6.3=100)
A:
PF0050123=AMP-binding=FE(9.9=100)
C2:
PF0050123=AMP-binding=FE(6.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCCACTATCCCATCACCA
R:
CTGCACGTCATATCCTGGTGA
Band lengths:
157-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]