HsaEX0002099 @ hg19
Exon Skipping
Gene
ENSG00000005187 | ACSM3
Description
acyl-CoA synthetase medium-chain family member 3 [Source:HGNC Symbol;Acc:10522]
Coordinates
chr16:20793030-20797480:+
Coord C1 exon
chr16:20793030-20793109
Coord A exon
chr16:20796306-20796429
Coord C2 exon
chr16:20797400-20797480
Length
124 bp
Sequences
Splice sites
3' ss Seq
TTATCTGGTTTTCTGAGAAGCTA
3' ss Score
2.55
5' ss Seq
ACGGTACCT
5' ss Score
6.79
Exon sequences
Seq C1 exon
ACACTCTCCAAGTACCCCATCACAGTCTTCTGTTCAGCACCAACTGTATACCGAATGCTTGTACAGAATGATATAACCAG
Seq A exon
CTATAAGTTTAAAAGCTTAAAGCACTGTGTGAGTGCTGGGGAACCAATTACCCCTGACGTGACTGAAAAATGGAGAAACAAGACGGGCCTGGATATCTACGAAGGATATGGACAGACTGAAACG
Seq C2 exon
GTGCTAATCTGTGGAAATTTTAAGGGAATGAAAATTAAACCTGGCTCAATGGGAAAACCTTCTCCTGCTTTCGATGTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005187-'9-11,'9-10,10-11
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.012 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(12.0=100)
A:
PF0050123=AMP-binding=FE(11.7=100)
C2:
PF0050123=AMP-binding=PD(11.1=67.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTCCAAGTACCCCATCACA
R:
ACATCGAAAGCAGGAGAAGGT
Band lengths:
155-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)